Results 1 - 20 of 1253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6489 | 5' | -64.1 | NC_001847.1 | + | 20396 | 1.09 | 0.00058 |
Target: 5'- aGGCGACCGCGACCGCGACCGCCGGCAc -3' miRNA: 3'- -CCGCUGGCGCUGGCGCUGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 103696 | 0.88 | 0.01979 |
Target: 5'- cGGCGGcCCGCGccggggccGCCGCGGCCGCCGGCc -3' miRNA: 3'- -CCGCU-GGCGC--------UGGCGCUGGCGGCCGu -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 883 | 0.88 | 0.01979 |
Target: 5'- cGGCGGcCCGCGccggggccGCCGCGGCCGCCGGCc -3' miRNA: 3'- -CCGCU-GGCGC--------UGGCGCUGGCGGCCGu -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 87299 | 0.88 | 0.020311 |
Target: 5'- cGCGGCCGCGGCCGauuugcgcgcauUGGCCGCCGGCAu -3' miRNA: 3'- cCGCUGGCGCUGGC------------GCUGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 34782 | 0.86 | 0.028222 |
Target: 5'- cGCGGCCGCGGcgcgcggcuacgacCCGCGGCCGCUGGCGc -3' miRNA: 3'- cCGCUGGCGCU--------------GGCGCUGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 134246 | 0.85 | 0.032361 |
Target: 5'- cGGCGGCCgGCGGCCGCGGCgGCCccGGCGc -3' miRNA: 3'- -CCGCUGG-CGCUGGCGCUGgCGG--CCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 47855 | 0.85 | 0.032361 |
Target: 5'- -uCGGCCGCGGCCGCgGGCCGUCGGCGc -3' miRNA: 3'- ccGCUGGCGCUGGCG-CUGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 31433 | 0.85 | 0.032361 |
Target: 5'- cGGCGGCCgGCGGCCGCGGCgGCCccGGCGc -3' miRNA: 3'- -CCGCUGG-CGCUGGCGCUGgCGG--CCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 119890 | 0.85 | 0.033207 |
Target: 5'- cGGCGAUCGCGugCGUGgccgccgccGCCGCCGGCGc -3' miRNA: 3'- -CCGCUGGCGCugGCGC---------UGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 29535 | 0.85 | 0.034074 |
Target: 5'- uGGCGGCCGCGcUCGCGgcccuggagGCCGCCGGCGg -3' miRNA: 3'- -CCGCUGGCGCuGGCGC---------UGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 132348 | 0.85 | 0.034074 |
Target: 5'- uGGCGGCCGCGcUCGCGgcccuggagGCCGCCGGCGg -3' miRNA: 3'- -CCGCUGGCGCuGGCGC---------UGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 18978 | 0.84 | 0.03681 |
Target: 5'- cGCGGCCGCGGcgcCCGCGGCCGCCaGCGc -3' miRNA: 3'- cCGCUGGCGCU---GGCGCUGGCGGcCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 119584 | 0.84 | 0.03681 |
Target: 5'- cGGCGGCCGCGGCC-CGACgGCCGcGCGc -3' miRNA: 3'- -CCGCUGGCGCUGGcGCUGgCGGC-CGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 35557 | 0.84 | 0.039762 |
Target: 5'- aGGCGGCgCGCGACCGCGACgagggCGCCGGg- -3' miRNA: 3'- -CCGCUG-GCGCUGGCGCUG-----GCGGCCgu -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 103229 | 0.84 | 0.040797 |
Target: 5'- cGCGAgCCGCGGCCGCGGCCGUgaucugcggCGGCAu -3' miRNA: 3'- cCGCU-GGCGCUGGCGCUGGCG---------GCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 15017 | 0.83 | 0.045204 |
Target: 5'- cGGUggGGCCGCGcgaGCCGCGGCCGCCGGgCGa -3' miRNA: 3'- -CCG--CUGGCGC---UGGCGCUGGCGGCC-GU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 44918 | 0.83 | 0.046377 |
Target: 5'- cGGCGGCCGCGACCGUG-UCGCUGGg- -3' miRNA: 3'- -CCGCUGGCGCUGGCGCuGGCGGCCgu -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 116164 | 0.82 | 0.048812 |
Target: 5'- uGGCGGCCGCGggcGCCGCGGCCGCgcUGGUc -3' miRNA: 3'- -CCGCUGGCGC---UGGCGCUGGCG--GCCGu -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 106119 | 0.82 | 0.055457 |
Target: 5'- cGGCGAgCGCGgcgcgggcGCCGCuGCCGCCGGCGc -3' miRNA: 3'- -CCGCUgGCGC--------UGGCGcUGGCGGCCGU- -5' |
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6489 | 5' | -64.1 | NC_001847.1 | + | 3306 | 0.82 | 0.055457 |
Target: 5'- cGGCGAgCGCGgcgcgggcGCCGCuGCCGCCGGCGc -3' miRNA: 3'- -CCGCUgGCGC--------UGGCGcUGGCGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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