Results 1 - 20 of 707 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 44829 | 0.66 | 0.579914 |
Target: 5'- cGGCCcCGGCGGCcCCacCGAacgcGCGCUCg -3' miRNA: 3'- cUCGGcGUCGCCGaGGc-GCU----UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 7417 | 0.66 | 0.588876 |
Target: 5'- cGGCaCGCGGCGGCUugccaaggcgcagUCGCuAGCGCg- -3' miRNA: 3'- cUCG-GCGUCGCCGA-------------GGCGcUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 48196 | 0.66 | 0.589873 |
Target: 5'- -uGCCGCgccGGCGGCcagggCCGagGAGCGCa- -3' miRNA: 3'- cuCGGCG---UCGCCGa----GGCg-CUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 17712 | 0.66 | 0.583893 |
Target: 5'- -cGCCGCAgugcacguacaGCGGCUCgGCguacGAggcggccacggccucGCGCUCg -3' miRNA: 3'- cuCGGCGU-----------CGCCGAGgCG----CU---------------UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 89121 | 0.66 | 0.579914 |
Target: 5'- -cGCCGCcccGGUGGUcgUGCGcGCGCUCg -3' miRNA: 3'- cuCGGCG---UCGCCGagGCGCuUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 118985 | 0.66 | 0.588876 |
Target: 5'- cGAG-CGCGGCGGCg-UGCGAcaugcugGCGCUg -3' miRNA: 3'- -CUCgGCGUCGCCGagGCGCU-------UGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2666 | 0.66 | 0.579914 |
Target: 5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3' miRNA: 3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 3935 | 0.66 | 0.579914 |
Target: 5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3' miRNA: 3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 134082 | 0.66 | 0.589873 |
Target: 5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3' miRNA: 3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 101079 | 0.66 | 0.579914 |
Target: 5'- -cGCCGCGGgGGCcgggUCgGCGGggcgggcgggcGCGUUCg -3' miRNA: 3'- cuCGGCGUCgCCG----AGgCGCU-----------UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 35623 | 0.66 | 0.579914 |
Target: 5'- -cGCCGcCGGCGGCgCUGgGGccaGCGCUg -3' miRNA: 3'- cuCGGC-GUCGCCGaGGCgCU---UGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 12458 | 0.66 | 0.589873 |
Target: 5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3' miRNA: 3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 5162 | 0.66 | 0.588876 |
Target: 5'- cGGGCCaggcaucgGCGGCGauuucggggaacaGCgCCGCGAGCGCg- -3' miRNA: 3'- -CUCGG--------CGUCGC-------------CGaGGCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 69264 | 0.66 | 0.579914 |
Target: 5'- -cGCgGCuGGCGGCggCCGCGGGCuucCUCu -3' miRNA: 3'- cuCGgCG-UCGCCGa-GGCGCUUGc--GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 17088 | 0.66 | 0.589873 |
Target: 5'- cAGCCGCguaaaAGCGGCgcUCCauGUuAGCGCUCu -3' miRNA: 3'- cUCGGCG-----UCGCCG--AGG--CGcUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 33174 | 0.66 | 0.579914 |
Target: 5'- -cGCUGCAGCGGCuggccggcUCUGCGcccgacuuggcGGCGCg- -3' miRNA: 3'- cuCGGCGUCGCCG--------AGGCGC-----------UUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 106757 | 0.66 | 0.579914 |
Target: 5'- -cGCCGCGGCGGggggggcgccguCUCCggcGCGAGgGCg- -3' miRNA: 3'- cuCGGCGUCGCC------------GAGG---CGCUUgCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 72038 | 0.66 | 0.579914 |
Target: 5'- -cGCgGCGGCGGCcCCG-GGGCGUa- -3' miRNA: 3'- cuCGgCGUCGCCGaGGCgCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 81845 | 0.66 | 0.589873 |
Target: 5'- -cGCCGCacuGGCGGCgaucgaGCGcGCGUUCg -3' miRNA: 3'- cuCGGCG---UCGCCGagg---CGCuUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 103484 | 0.66 | 0.589873 |
Target: 5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3' miRNA: 3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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