miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 3' -52.8 NC_001847.1 + 70529 0.66 0.974935
Target:  5'- uGCUgGGCgGCGUgcUGGCGcUGG-CCGAc -3'
miRNA:   3'- -CGAaCUGgUGCA--ACCGC-ACCaGGUUc -5'
6492 3' -52.8 NC_001847.1 + 80759 0.66 0.974935
Target:  5'- aCUUGGuCCGCGccGGCGcGGaCCGGGa -3'
miRNA:   3'- cGAACU-GGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 10841 0.66 0.974935
Target:  5'- cGCgcGACgGCGgc-GCGUGG-CCGAGg -3'
miRNA:   3'- -CGaaCUGgUGCaacCGCACCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 26612 0.66 0.974935
Target:  5'- uGCUgacGGCCACGUgGGCGcgaaagcccucgUGcUCCAAGc -3'
miRNA:   3'- -CGAa--CUGGUGCAaCCGC------------ACcAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 131158 0.66 0.972192
Target:  5'- aCUUGGCCGCGcUGGCGcugcucacGGcCCAc- -3'
miRNA:   3'- cGAACUGGUGCaACCGCa-------CCaGGUuc -5'
6492 3' -52.8 NC_001847.1 + 48191 0.66 0.96924
Target:  5'- uGCUguGCCGCGccGGCGgccagGG-CCGAGg -3'
miRNA:   3'- -CGAacUGGUGCaaCCGCa----CCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 132462 0.66 0.966071
Target:  5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3'
miRNA:   3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 29649 0.66 0.966071
Target:  5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3'
miRNA:   3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 42128 0.66 0.966071
Target:  5'- cGCUUc-CCGCGUUGGCGagagcUGGcCCGGc -3'
miRNA:   3'- -CGAAcuGGUGCAACCGC-----ACCaGGUUc -5'
6492 3' -52.8 NC_001847.1 + 26822 0.66 0.966071
Target:  5'- cGC-UGGCCAgcuUGUcuuGCGUGGUCCAc- -3'
miRNA:   3'- -CGaACUGGU---GCAac-CGCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 97094 0.66 0.966071
Target:  5'- aGCUUaGCCGCGgcGGCGcGGUUggccgCGAGa -3'
miRNA:   3'- -CGAAcUGGUGCaaCCGCaCCAG-----GUUC- -5'
6492 3' -52.8 NC_001847.1 + 134059 0.66 0.962678
Target:  5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3'
miRNA:   3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5'
6492 3' -52.8 NC_001847.1 + 116713 0.66 0.962678
Target:  5'- gGC-UGGCCGCGgcGcaCGUGG-CCAAGg -3'
miRNA:   3'- -CGaACUGGUGCaaCc-GCACCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 31246 0.66 0.962678
Target:  5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3'
miRNA:   3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5'
6492 3' -52.8 NC_001847.1 + 83399 0.66 0.962678
Target:  5'- ---aGACCGCGUUGG-G-GGUCUuuGAGa -3'
miRNA:   3'- cgaaCUGGUGCAACCgCaCCAGG--UUC- -5'
6492 3' -52.8 NC_001847.1 + 23319 0.67 0.959056
Target:  5'- cGCUgagccgcGCCACGUccuUGGCGUcGUCCGc- -3'
miRNA:   3'- -CGAac-----UGGUGCA---ACCGCAcCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 81048 0.67 0.959056
Target:  5'- uGCgggGGCgACGUgGGCGUGGg-CGGGg -3'
miRNA:   3'- -CGaa-CUGgUGCAaCCGCACCagGUUC- -5'
6492 3' -52.8 NC_001847.1 + 81939 0.67 0.952772
Target:  5'- aGCUUGACgGCGUcgaggUGGCGgcgcgccacagccgGGUCgCAGc -3'
miRNA:   3'- -CGAACUGgUGCA-----ACCGCa-------------CCAG-GUUc -5'
6492 3' -52.8 NC_001847.1 + 45341 0.67 0.951105
Target:  5'- cGCUUGAgCAgGUUcucCGUGGUCCGc- -3'
miRNA:   3'- -CGAACUgGUgCAAcc-GCACCAGGUuc -5'
6492 3' -52.8 NC_001847.1 + 13247 0.67 0.937844
Target:  5'- aGCggGGCCACGcgGGCGguucgcaggcaggccGcGUCCAGGg -3'
miRNA:   3'- -CGaaCUGGUGCaaCCGCa--------------C-CAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.