miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 3240 0.66 0.999647
Target:  5'- cCCGCGCCgugcucGCCggcggCAGgg--GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGa----GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 73546 0.66 0.999647
Target:  5'- aCCGCGCgUacUcgGCCUUugAGUgcgcggUGCu -3'
miRNA:   3'- -GGCGCGgAauAuaCGGAG--UCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 106053 0.66 0.999647
Target:  5'- cCCGCGCCgugcucGCCggcggCAGgg--GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGa----GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 74287 0.66 0.999647
Target:  5'- cUCGCGCUg-----GCCUCGGcgg-GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 18991 0.66 0.999647
Target:  5'- cCCGCgGCCgccagcGCCUCGGgcc-GCg -3'
miRNA:   3'- -GGCG-CGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 77167 0.66 0.999612
Target:  5'- aCCGCGCCgguccUGCCUCccgacgccGCg -3'
miRNA:   3'- -GGCGCGGaauauACGGAGucaaaa--CG- -5'
6493 3' -47.7 NC_001847.1 + 85755 0.66 0.999555
Target:  5'- cCCGCGCCacccaggccgGUA-GUCUUAGUgccgGCg -3'
miRNA:   3'- -GGCGCGGaa--------UAUaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 14147 0.66 0.999555
Target:  5'- cCCGCGCCUgggcgGCCgcUAGg---GCg -3'
miRNA:   3'- -GGCGCGGAauauaCGGa-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 48391 0.66 0.999442
Target:  5'- gCCGgGCCgg----GCCUCGGcg--GCa -3'
miRNA:   3'- -GGCgCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 35653 0.66 0.999442
Target:  5'- aCCGCGCC------GCCUCGGcg--GCc -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 66228 0.66 0.999442
Target:  5'- gCCGCGCCgaa----CCUCAGcgcgGCg -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 64689 0.66 0.999442
Target:  5'- cCCGCGCgUgucgcaGUGCgUCAGgcgcgGCa -3'
miRNA:   3'- -GGCGCGgAaua---UACGgAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 127723 0.66 0.999442
Target:  5'- aCUGCGCCUUGgcaaGCCgcCGGUgccgucUGCc -3'
miRNA:   3'- -GGCGCGGAAUaua-CGGa-GUCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 72085 0.66 0.999305
Target:  5'- cCCGCGCCUc----GCC-CAGcUUUUGg -3'
miRNA:   3'- -GGCGCGGAauauaCGGaGUC-AAAACg -5'
6493 3' -47.7 NC_001847.1 + 100909 0.66 0.99914
Target:  5'- gCCGCGCCgcGUAcuggGCCUgCAGc---GCg -3'
miRNA:   3'- -GGCGCGGaaUAUa---CGGA-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 42153 0.66 0.99914
Target:  5'- cCCgGCGCCUggacguUGCCggCGGg--UGCu -3'
miRNA:   3'- -GG-CGCGGAauau--ACGGa-GUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 103857 0.66 0.99914
Target:  5'- cCCGCGCCc-----GCCuggUCGGUgaUGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGG---AGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 32393 0.66 0.99914
Target:  5'- gUCGCGCCUUGcGUgggggguuucGCCUUGGg---GCa -3'
miRNA:   3'- -GGCGCGGAAUaUA----------CGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 15844 0.67 0.998943
Target:  5'- uUCGCGCCUU---UGCcCUCGGcgUUcGCc -3'
miRNA:   3'- -GGCGCGGAAuauACG-GAGUCaaAA-CG- -5'
6493 3' -47.7 NC_001847.1 + 99158 0.67 0.998943
Target:  5'- gCGCGCCUUGUGgcgccaGCCggCGGga--GCc -3'
miRNA:   3'- gGCGCGGAAUAUa-----CGGa-GUCaaaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.