Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 3' | -47.7 | NC_001847.1 | + | 3240 | 0.66 | 0.999647 |
Target: 5'- cCCGCGCCgugcucGCCggcggCAGgg--GCg -3' miRNA: 3'- -GGCGCGGaauauaCGGa----GUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 75300 | 0.68 | 0.996172 |
Target: 5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3' miRNA: 3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 6275 | 0.68 | 0.994472 |
Target: 5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3' miRNA: 3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 18040 | 1.17 | 0.005637 |
Target: 5'- cCCGCGCCUUAUAUGCCUCAGUUUUGCg -3' miRNA: 3'- -GGCGCGGAAUAUACGGAGUCAAAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 127723 | 0.66 | 0.999442 |
Target: 5'- aCUGCGCCUUGgcaaGCCgcCGGUgccgucUGCc -3' miRNA: 3'- -GGCGCGGAAUaua-CGGa-GUCAaa----ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 72085 | 0.66 | 0.999305 |
Target: 5'- cCCGCGCCUc----GCC-CAGcUUUUGg -3' miRNA: 3'- -GGCGCGGAauauaCGGaGUC-AAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 103857 | 0.66 | 0.99914 |
Target: 5'- cCCGCGCCc-----GCCuggUCGGUgaUGCg -3' miRNA: 3'- -GGCGCGGaauauaCGG---AGUCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 42153 | 0.66 | 0.99914 |
Target: 5'- cCCgGCGCCUggacguUGCCggCGGg--UGCu -3' miRNA: 3'- -GG-CGCGGAauau--ACGGa-GUCaaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 67198 | 0.67 | 0.998103 |
Target: 5'- gCCGCGgC-UGUGUGCCgUC-GUgcUGCg -3' miRNA: 3'- -GGCGCgGaAUAUACGG-AGuCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 4516 | 0.68 | 0.996764 |
Target: 5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3' miRNA: 3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 30708 | 0.67 | 0.997721 |
Target: 5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3' miRNA: 3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 39756 | 0.67 | 0.998708 |
Target: 5'- cCCgGCGCCg-----GCCUCAGagccgGCg -3' miRNA: 3'- -GG-CGCGGaauauaCGGAGUCaaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 73546 | 0.66 | 0.999647 |
Target: 5'- aCCGCGCgUacUcgGCCUUugAGUgcgcggUGCu -3' miRNA: 3'- -GGCGCGgAauAuaCGGAG--UCAaa----ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 87602 | 0.68 | 0.997277 |
Target: 5'- cCCGCGCCcgccGUGCUggAGUUUgacaGCg -3' miRNA: 3'- -GGCGCGGaauaUACGGagUCAAAa---CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 85755 | 0.66 | 0.999555 |
Target: 5'- cCCGCGCCacccaggccgGUA-GUCUUAGUgccgGCg -3' miRNA: 3'- -GGCGCGGaa--------UAUaCGGAGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 100909 | 0.66 | 0.99914 |
Target: 5'- gCCGCGCCgcGUAcuggGCCUgCAGc---GCg -3' miRNA: 3'- -GGCGCGGaaUAUa---CGGA-GUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 91515 | 0.68 | 0.996764 |
Target: 5'- cCCGCGCCcuguaAUGUGCUUgAGg---GCc -3' miRNA: 3'- -GGCGCGGaa---UAUACGGAgUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 109174 | 0.68 | 0.994723 |
Target: 5'- gCCGCGCgCUUGUucccaagGCgUCGGggcgggUGCg -3' miRNA: 3'- -GGCGCG-GAAUAua-----CGgAGUCaaa---ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 64689 | 0.66 | 0.999442 |
Target: 5'- cCCGCGCgUgucgcaGUGCgUCAGgcgcgGCa -3' miRNA: 3'- -GGCGCGgAaua---UACGgAGUCaaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 32393 | 0.66 | 0.99914 |
Target: 5'- gUCGCGCCUUGcGUgggggguuucGCCUUGGg---GCa -3' miRNA: 3'- -GGCGCGGAAUaUA----------CGGAGUCaaaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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