miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 109174 0.68 0.994723
Target:  5'- gCCGCGCgCUUGUucccaagGCgUCGGggcgggUGCg -3'
miRNA:   3'- -GGCGCG-GAAUAua-----CGgAGUCaaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 89288 0.71 0.972864
Target:  5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3'
miRNA:   3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 75300 0.68 0.996172
Target:  5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3'
miRNA:   3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 85755 0.66 0.999555
Target:  5'- cCCGCGCCacccaggccgGUA-GUCUUAGUgccgGCg -3'
miRNA:   3'- -GGCGCGGaa--------UAUaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 47014 0.71 0.974568
Target:  5'- gCGCGCCUUGUG-GCUcaUCAGcag-GCg -3'
miRNA:   3'- gGCGCGGAAUAUaCGG--AGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 100504 0.7 0.985874
Target:  5'- gCGCGCCgc-UcgGCCUCGGcgcgcagGCg -3'
miRNA:   3'- gGCGCGGaauAuaCGGAGUCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 52593 0.72 0.949327
Target:  5'- aCCGCGCgcgGUGcGCUUCGGUagUGCg -3'
miRNA:   3'- -GGCGCGgaaUAUaCGGAGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 23686 0.73 0.934654
Target:  5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3'
miRNA:   3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 73546 0.66 0.999647
Target:  5'- aCCGCGCgUacUcgGCCUUugAGUgcgcggUGCu -3'
miRNA:   3'- -GGCGCGgAauAuaCGGAG--UCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 3240 0.66 0.999647
Target:  5'- cCCGCGCCgugcucGCCggcggCAGgg--GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGa----GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 127723 0.66 0.999442
Target:  5'- aCUGCGCCUUGgcaaGCCgcCGGUgccgucUGCc -3'
miRNA:   3'- -GGCGCGGAAUaua-CGGa-GUCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 103857 0.66 0.99914
Target:  5'- cCCGCGCCc-----GCCuggUCGGUgaUGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGG---AGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 64689 0.66 0.999442
Target:  5'- cCCGCGCgUgucgcaGUGCgUCAGgcgcgGCa -3'
miRNA:   3'- -GGCGCGgAaua---UACGgAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 50123 0.72 0.953685
Target:  5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3'
miRNA:   3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 53575 0.67 0.998807
Target:  5'- gCCGCGCUgggcgacguggAUGCCUU---UUUGCg -3'
miRNA:   3'- -GGCGCGGaaua-------UACGGAGucaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 1426 0.67 0.998708
Target:  5'- cCCGCGCCccgccaggcacUAUuUGCgCUCGGg--UGCa -3'
miRNA:   3'- -GGCGCGGa----------AUAuACG-GAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 79103 0.67 0.99843
Target:  5'- gCCGCGCC----GUGCCUguGgaagaagGCc -3'
miRNA:   3'- -GGCGCGGaauaUACGGAguCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 105007 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 75140 0.69 0.990503
Target:  5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3'
miRNA:   3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5'
6493 3' -47.7 NC_001847.1 + 682 0.69 0.991747
Target:  5'- gCCGCGCC-UAUGccaucuugcccUGCCgcaAGUUUaUGCu -3'
miRNA:   3'- -GGCGCGGaAUAU-----------ACGGag-UCAAA-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.