miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 73118 0.66 0.982118
Target:  5'- gGUGGCGGaGGUAgCCGccGUGCUc-- -3'
miRNA:   3'- -CAUCGCCgUCAUgGGUuuCACGAagg -5'
6496 3' -51.7 NC_001847.1 + 66245 0.66 0.982118
Target:  5'- --cGCGGCGGcGCUCGGcaUGCUgggCCg -3'
miRNA:   3'- cauCGCCGUCaUGGGUUucACGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 44304 0.66 0.982118
Target:  5'- cGgcGCGGCGGgccaGCgCCAGagcGGUGCccgCCg -3'
miRNA:   3'- -CauCGCCGUCa---UG-GGUU---UCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 43911 0.66 0.982118
Target:  5'- -cGGCuGCAGgcggacCCCGAAGUGUuguucgcauuUUCCg -3'
miRNA:   3'- caUCGcCGUCau----GGGUUUCACG----------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 51319 0.66 0.981907
Target:  5'- --uGCGGCGGcgcuucauggaccUGCUCAAcGgcgGCUUCCu -3'
miRNA:   3'- cauCGCCGUC-------------AUGGGUUuCa--CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 17909 0.66 0.979929
Target:  5'- -gGGCGaCGGcGgCCAAGGUGCcggUCCg -3'
miRNA:   3'- caUCGCcGUCaUgGGUUUCACGa--AGG- -5'
6496 3' -51.7 NC_001847.1 + 109738 0.66 0.979929
Target:  5'- aUAGCccccugGCCCGcAGUGCUUCCg -3'
miRNA:   3'- cAUCGccgucaUGGGUuUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 53939 0.66 0.979929
Target:  5'- -cGGCGGCucuGUGCgCGAGGcgGCcgCCu -3'
miRNA:   3'- caUCGCCGu--CAUGgGUUUCa-CGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 6925 0.66 0.979929
Target:  5'- aUAGCccccugGCCCGcAGUGCUUCCg -3'
miRNA:   3'- cAUCGccgucaUGGGUuUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 13940 0.66 0.979929
Target:  5'- --cGCGGCAGgggggccGCCCcgcgcAAGUGCcgCCc -3'
miRNA:   3'- cauCGCCGUCa------UGGGu----UUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 111629 0.66 0.9797
Target:  5'- -gGGCGGCGaccucguGUGCUCuGGGUGCcaCCu -3'
miRNA:   3'- caUCGCCGU-------CAUGGGuUUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 8293 0.66 0.977547
Target:  5'- -aAGCGGCAGggcucCCCGGGGggccagGCUgUCg -3'
miRNA:   3'- caUCGCCGUCau---GGGUUUCa-----CGAaGG- -5'
6496 3' -51.7 NC_001847.1 + 69269 0.66 0.977547
Target:  5'- cUGGCGGCGG---CCGcGG-GCUUCCu -3'
miRNA:   3'- cAUCGCCGUCaugGGUuUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 126026 0.66 0.977297
Target:  5'- --uGCGGCAGguCCCuAGGUGCagucgaggcgcggUUCCu -3'
miRNA:   3'- cauCGCCGUCauGGGuUUCACG-------------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 23213 0.66 0.977297
Target:  5'- --uGCGGCAGguCCCuAGGUGCagucgaggcgcggUUCCu -3'
miRNA:   3'- cauCGCCGUCauGGGuUUCACG-------------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 128534 0.66 0.974962
Target:  5'- -cGGCGGCuuUACuCCAAcagcGGUGCgacUCCc -3'
miRNA:   3'- caUCGCCGucAUG-GGUU----UCACGa--AGG- -5'
6496 3' -51.7 NC_001847.1 + 58686 0.66 0.974962
Target:  5'- -gGGCGGCAGgcugGCCau-GGcGCUggcaUCCa -3'
miRNA:   3'- caUCGCCGUCa---UGGguuUCaCGA----AGG- -5'
6496 3' -51.7 NC_001847.1 + 58754 0.66 0.974962
Target:  5'- -cAGCGGCGGcgGCCgCGAcggucgcuGGUGCUgcagCUa -3'
miRNA:   3'- caUCGCCGUCa-UGG-GUU--------UCACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 38178 0.66 0.974962
Target:  5'- -aAGCGGCcGUACCCGcgaacgaaGAGcGCcugCCg -3'
miRNA:   3'- caUCGCCGuCAUGGGU--------UUCaCGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 47896 0.66 0.974146
Target:  5'- -aAGCGGCAGauCCCGcggcGGUgagcgcugcgcagcGCUUCCa -3'
miRNA:   3'- caUCGCCGUCauGGGUu---UCA--------------CGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.