Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6496 | 3' | -51.7 | NC_001847.1 | + | 15979 | 1.12 | 0.003706 |
Target: 5'- gGUAGCGGCAGUACCCAAAGUGCUUCCu -3' miRNA: 3'- -CAUCGCCGUCAUGGGUUUCACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 71498 | 0.75 | 0.619441 |
Target: 5'- gGUGGCGGCGGUGCgC--GGUGcCUUUCg -3' miRNA: 3'- -CAUCGCCGUCAUGgGuuUCAC-GAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 59288 | 0.74 | 0.661183 |
Target: 5'- -cGGCGGCGggaaaccGUACCCAGGGUGCc--- -3' miRNA: 3'- caUCGCCGU-------CAUGGGUUUCACGaagg -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 29887 | 0.74 | 0.69411 |
Target: 5'- --cGCGGCGGagugccugccGCCCGAAGUGCgcCCg -3' miRNA: 3'- cauCGCCGUCa---------UGGGUUUCACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 27164 | 0.74 | 0.69411 |
Target: 5'- --cGCGGCGGccaGCCCAAuaaugucggcggGGUGCUUCa -3' miRNA: 3'- cauCGCCGUCa--UGGGUU------------UCACGAAGg -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 13490 | 0.74 | 0.683533 |
Target: 5'- -cAGCGGCGGccuuCCgCGAAGUGCgcgCCa -3' miRNA: 3'- caUCGCCGUCau--GG-GUUUCACGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 39822 | 0.73 | 0.715083 |
Target: 5'- --cGCGGCGG-GCCCG-AGcGCUUCCu -3' miRNA: 3'- cauCGCCGUCaUGGGUuUCaCGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 130910 | 0.72 | 0.775804 |
Target: 5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3' miRNA: 3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 81481 | 0.72 | 0.785493 |
Target: 5'- cUGGCGGCAGUugagcgGCCCG-GGUGCccggUCUu -3' miRNA: 3'- cAUCGCCGUCA------UGGGUuUCACGa---AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 28097 | 0.72 | 0.775804 |
Target: 5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3' miRNA: 3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 47598 | 0.71 | 0.840111 |
Target: 5'- aGUGGCGGUAGaUGCCCGcgaauaCUUCCa -3' miRNA: 3'- -CAUCGCCGUC-AUGGGUuucac-GAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 14529 | 0.71 | 0.848541 |
Target: 5'- -cGGCGGCGcucgcUGCCCGcGGUGCcgCCg -3' miRNA: 3'- caUCGCCGUc----AUGGGUuUCACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 80920 | 0.71 | 0.831474 |
Target: 5'- -aAGCGGCcGUGgCCGccGUGCUggCCg -3' miRNA: 3'- caUCGCCGuCAUgGGUuuCACGAa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 43093 | 0.7 | 0.887323 |
Target: 5'- -cGGCGGCGGaggcGCCCGGAG-GCg-CCg -3' miRNA: 3'- caUCGCCGUCa---UGGGUUUCaCGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 21954 | 0.7 | 0.872511 |
Target: 5'- --cGCGGCGGcACCgGGGGggGCUUUCg -3' miRNA: 3'- cauCGCCGUCaUGGgUUUCa-CGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 38759 | 0.7 | 0.880038 |
Target: 5'- cGUGGCGGCGG-GCCC---GUGCUggagcacgagcgUCCc -3' miRNA: 3'- -CAUCGCCGUCaUGGGuuuCACGA------------AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 37661 | 0.7 | 0.856756 |
Target: 5'- --uGCGGCAGccGCCCAgcgAGGUGCagaCCg -3' miRNA: 3'- cauCGCCGUCa-UGGGU---UUCACGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 114844 | 0.7 | 0.887323 |
Target: 5'- -gAGCuaGGCgAGUACUCAAucaUGCUUCCg -3' miRNA: 3'- caUCG--CCG-UCAUGGGUUuc-ACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 78854 | 0.7 | 0.887323 |
Target: 5'- aGUAGCuGguGUGCUCGcGGUGCgcgCCc -3' miRNA: 3'- -CAUCGcCguCAUGGGUuUCACGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 49072 | 0.69 | 0.90704 |
Target: 5'- -gGGCGGCGGcAgCCGAcaagccaacagacAGUGCgUCCg -3' miRNA: 3'- caUCGCCGUCaUgGGUU-------------UCACGaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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