miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 128195 0.67 0.923819
Target:  5'- gCGGCAgGGCGGAGgGGga--CCGCGGa -3'
miRNA:   3'- -GUCGUaUUGCUUCgUCagcgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 127916 0.66 0.936414
Target:  5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 127197 0.67 0.923264
Target:  5'- -cGCAUGgcGCGAAcuccggcGCGG-CGCgCGCGGg -3'
miRNA:   3'- guCGUAU--UGCUU-------CGUCaGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 127000 0.69 0.814553
Target:  5'- aAGCAgccccGCGAGGCucGUCGgcccgcccgcCCCGCGGu -3'
miRNA:   3'- gUCGUau---UGCUUCGu-CAGC----------GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 126203 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 125528 0.7 0.768442
Target:  5'- gCGGCGgcgGGCGcAGCuacGGUCGucCCCGCGGc -3'
miRNA:   3'- -GUCGUa--UUGCuUCG---UCAGC--GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 125395 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 125213 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 124844 0.67 0.917572
Target:  5'- gCAGCAccgccgcacugacUGGCGAGcGCGcg-GCCCGCGGu -3'
miRNA:   3'- -GUCGU-------------AUUGCUU-CGUcagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 124336 0.69 0.802025
Target:  5'- gCAGCAgcGCGcGGCAGUagcccaaaaacagGCCCGCGu -3'
miRNA:   3'- -GUCGUauUGCuUCGUCAg------------CGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 123865 0.68 0.88617
Target:  5'- -cGCGUAcuugguaauucAgGAAGCccAG-CGCCCGCGGc -3'
miRNA:   3'- guCGUAU-----------UgCUUCG--UCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 123673 0.66 0.934413
Target:  5'- -uGUGUGGCGggGC--UCGCCaCGCGc -3'
miRNA:   3'- guCGUAUUGCuuCGucAGCGG-GCGCc -5'
6497 3' -54.3 NC_001847.1 + 122138 0.66 0.948463
Target:  5'- aCGGCcg-GCGc-GCAGggCGCCgCGCGGg -3'
miRNA:   3'- -GUCGuauUGCuuCGUCa-GCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 122080 0.66 0.944023
Target:  5'- gCAGCAgcGCGucacgccaaaaaGAGCAG-CGCCUcaGUGGg -3'
miRNA:   3'- -GUCGUauUGC------------UUCGUCaGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 122014 0.71 0.729245
Target:  5'- gCGGCA-GGCGgcGCGGcgcCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuuCGUCa--GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 120978 0.7 0.777952
Target:  5'- -cGCGUAaGCGcGGCcGUCGCCCuaGCGGc -3'
miRNA:   3'- guCGUAU-UGCuUCGuCAGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 120918 0.7 0.796559
Target:  5'- aGGCAUAcgaggGCGggGCGG--GCgCGCGGg -3'
miRNA:   3'- gUCGUAU-----UGCuuCGUCagCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120714 0.71 0.709088
Target:  5'- cCGGCGccguCGAGGCAGUCGCgacCCGCu- -3'
miRNA:   3'- -GUCGUauu-GCUUCGUCAGCG---GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 120236 0.75 0.504199
Target:  5'- -cGCG--GCGAGGCAGUCGgCCUGCGc -3'
miRNA:   3'- guCGUauUGCUUCGUCAGC-GGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 120084 0.71 0.729245
Target:  5'- gAGCcgcGCGggGCGGgagauaaagCGCCCGCGc -3'
miRNA:   3'- gUCGuauUGCuuCGUCa--------GCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.