miRNA display CGI


Results 21 - 40 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 69682 0.66 0.934413
Target:  5'- gCAGCGUugggcGCGggGcCGGcgcUCgGUCCGCGGc -3'
miRNA:   3'- -GUCGUAu----UGCuuC-GUC---AG-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31419 0.66 0.934413
Target:  5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 102232 0.66 0.944023
Target:  5'- gGGCGgGACGGcguccaGGCGcUCGCgCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU------UCGUcAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 22582 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 12673 0.66 0.92924
Target:  5'- aCGGCGacGCGAAGCuGcacugcgCGUCgGCGGg -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa------GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132726 0.66 0.92924
Target:  5'- aAGCuUGGCGAAGCGG-CGCa-GCGa -3'
miRNA:   3'- gUCGuAUUGCUUCGUCaGCGggCGCc -5'
6497 3' -54.3 NC_001847.1 + 52917 0.66 0.939341
Target:  5'- nGGCA--GCGGcuCGGggCGCCCGCGa -3'
miRNA:   3'- gUCGUauUGCUucGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 132634 0.66 0.948463
Target:  5'- gCAGCAaagcGCGAGGCGGcC-CUCGCGa -3'
miRNA:   3'- -GUCGUau--UGCUUCGUCaGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 82528 0.66 0.934413
Target:  5'- -cGCAcgcgcCGAAGUcaaAGgcgcCGCCCGCGGg -3'
miRNA:   3'- guCGUauu--GCUUCG---UCa---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 80575 0.66 0.948463
Target:  5'- cCAGCcc-GCGggGCcGUCGUccuCCGCGc -3'
miRNA:   3'- -GUCGuauUGCuuCGuCAGCG---GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 25103 0.66 0.936414
Target:  5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 54546 0.66 0.934413
Target:  5'- gGGCGggGGCGGGgaagacGCAGUcgCGCCCGUGa -3'
miRNA:   3'- gUCGUa-UUGCUU------CGUCA--GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 102746 0.66 0.939341
Target:  5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3'
miRNA:   3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 71474 0.66 0.944023
Target:  5'- gGGCAUGGCGGccgcgagcaugAGCAGaUCuUCCGCGu -3'
miRNA:   3'- gUCGUAUUGCU-----------UCGUC-AGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 105586 0.66 0.944023
Target:  5'- cCGGCAcGGCGuccguGCGGgggaacucgagCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuu---CGUCa----------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 29366 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 78252 0.67 0.923819
Target:  5'- -cGCcg-GCGucGCcGUCGCCgGCGGg -3'
miRNA:   3'- guCGuauUGCuuCGuCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132564 0.66 0.92924
Target:  5'- gCGGCcgcGGCGGccgcGCAGgCGCCCGCGc -3'
miRNA:   3'- -GUCGua-UUGCUu---CGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 28510 0.66 0.92924
Target:  5'- aGGCGUGGCccGGCAG-CGCgCCGCc- -3'
miRNA:   3'- gUCGUAUUGcuUCGUCaGCG-GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 101234 0.66 0.92924
Target:  5'- gAGCugccAC-AGGCGGUccugcaCGCCCGCGGc -3'
miRNA:   3'- gUCGuau-UGcUUCGUCA------GCGGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.