miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 5' -57.3 NC_001847.1 + 12628 0.66 0.842758
Target:  5'- gGCGGCAcuGCUCGuacagccggcuguacACGGUCUCGgagcgGUAc -3'
miRNA:   3'- gCGUCGU--CGAGC---------------UGCCAGGGCaa---CAU- -5'
6497 5' -57.3 NC_001847.1 + 97441 0.66 0.839494
Target:  5'- aGCAGCAGCgcgcacgUGACgaGGUCCagcgCGUUGa- -3'
miRNA:   3'- gCGUCGUCGa------GCUG--CCAGG----GCAACau -5'
6497 5' -57.3 NC_001847.1 + 93759 0.66 0.839494
Target:  5'- gCGCGGCuGCcggCGGCGG-CCCGg---- -3'
miRNA:   3'- -GCGUCGuCGa--GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 15945 0.66 0.838673
Target:  5'- cCGCGGCgccgacgAGCUCgccauGACGGUCCCa----- -3'
miRNA:   3'- -GCGUCG-------UCGAG-----CUGCCAGGGcaacau -5'
6497 5' -57.3 NC_001847.1 + 59434 0.66 0.831201
Target:  5'- gGCGGCGGCcCG-CGG-CCCGUg--- -3'
miRNA:   3'- gCGUCGUCGaGCuGCCaGGGCAacau -5'
6497 5' -57.3 NC_001847.1 + 1477 0.66 0.831201
Target:  5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3'
miRNA:   3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 104290 0.66 0.831201
Target:  5'- cCGCGGCAGagccgcagCGGCGGcgCCuCGggGUAg -3'
miRNA:   3'- -GCGUCGUCga------GCUGCCa-GG-GCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 17668 0.66 0.822725
Target:  5'- aCGuCGGCGGCUCG-CGGUCCg------ -3'
miRNA:   3'- -GC-GUCGUCGAGCuGCCAGGgcaacau -5'
6497 5' -57.3 NC_001847.1 + 79903 0.66 0.822725
Target:  5'- aCGCAGCAGCggGACGcGUCCgcaGUg--- -3'
miRNA:   3'- -GCGUCGUCGagCUGC-CAGGg--CAacau -5'
6497 5' -57.3 NC_001847.1 + 78204 0.66 0.822725
Target:  5'- uCGCGGCGGCU--GCGGUgcaCCGUcGUGu -3'
miRNA:   3'- -GCGUCGUCGAgcUGCCAg--GGCAaCAU- -5'
6497 5' -57.3 NC_001847.1 + 31228 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 134041 0.66 0.814075
Target:  5'- cCGCGGCGGCgccgcccgCGgccGCGGcgCCCGgcGUGg -3'
miRNA:   3'- -GCGUCGUCGa-------GC---UGCCa-GGGCaaCAU- -5'
6497 5' -57.3 NC_001847.1 + 134244 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 31431 0.67 0.796283
Target:  5'- gGCGGCGGCcggcggccgCGGCGGcCCCGg---- -3'
miRNA:   3'- gCGUCGUCGa--------GCUGCCaGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 127352 0.67 0.787159
Target:  5'- cCGCGGCAGgggCGGCGGggCCCGa---- -3'
miRNA:   3'- -GCGUCGUCga-GCUGCCa-GGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 129109 0.67 0.781617
Target:  5'- gCGCAGUuuaacguccaaAGCUacaucgaacagaacgUGGCGGUCgCCGUUGUu -3'
miRNA:   3'- -GCGUCG-----------UCGA---------------GCUGCCAG-GGCAACAu -5'
6497 5' -57.3 NC_001847.1 + 104541 0.67 0.778827
Target:  5'- gCGCGGCGGCcccggggccgcuacgCGGCGGUCCUccUGg- -3'
miRNA:   3'- -GCGUCGUCGa--------------GCUGCCAGGGcaACau -5'
6497 5' -57.3 NC_001847.1 + 42386 0.67 0.777895
Target:  5'- uGCAGCGGCUgcaCGGCgaGGUCCUGg---- -3'
miRNA:   3'- gCGUCGUCGA---GCUG--CCAGGGCaacau -5'
6497 5' -57.3 NC_001847.1 + 72324 0.67 0.768499
Target:  5'- uGCGGCAGCUgcgCGAcuCGG-CCCGgcUUGUGc -3'
miRNA:   3'- gCGUCGUCGA---GCU--GCCaGGGC--AACAU- -5'
6497 5' -57.3 NC_001847.1 + 132300 0.67 0.749349
Target:  5'- uCGCAGCGGCaUGGCGGacCCCGa---- -3'
miRNA:   3'- -GCGUCGUCGaGCUGCCa-GGGCaacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.