miRNA display CGI


Results 41 - 60 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 14566 0.66 0.983193
Target:  5'- -aGCGCGGguGCUGGcGgGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCuuUGGUUcUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 110751 0.66 0.976513
Target:  5'- cCCGCGCGcgccgcGCCgGAGuucGCGCAUGCGGg -3'
miRNA:   3'- -GGCGCGUcuu---UGG-UUC---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132144 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30930 0.66 0.982997
Target:  5'- gUGCgGCGGAGGCCuucGcauaaacggcgcuGCGCGCGCGGu -3'
miRNA:   3'- gGCG-CGUCUUUGGuu-C-------------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 83441 0.66 0.973903
Target:  5'- aCGCGUucGAccCCGAcGACGgCGCGCGAc -3'
miRNA:   3'- gGCGCGu-CUuuGGUU-CUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16980 0.66 0.971089
Target:  5'- uCCaGCGCAGGGagacgcGCCccucgGGGACGCAgCGCGc -3'
miRNA:   3'- -GG-CGCGUCUU------UGG-----UUCUGUGU-GCGCu -5'
6500 3' -52.4 NC_001847.1 + 8104 0.66 0.983193
Target:  5'- gCGaCGCGGc-GCCAGcGCAgGCGCGGg -3'
miRNA:   3'- gGC-GCGUCuuUGGUUcUGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10662 0.66 0.98115
Target:  5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3'
miRNA:   3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 69350 0.66 0.971089
Target:  5'- gCgGCGCuGguGCU--GGCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 86037 0.66 0.983193
Target:  5'- gCUGCGCuGGuuGGgCGAGGCGCugGgGGc -3'
miRNA:   3'- -GGCGCGuCU--UUgGUUCUGUGugCgCU- -5'
6500 3' -52.4 NC_001847.1 + 80664 0.66 0.98115
Target:  5'- cCCgGCGCcgGGGAGCCGAacGGCuGCGCGCc- -3'
miRNA:   3'- -GG-CGCG--UCUUUGGUU--CUG-UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 28093 0.66 0.983193
Target:  5'- -gGCGCcugc-CCGGGGcCGCGCGCGAc -3'
miRNA:   3'- ggCGCGucuuuGGUUCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 97155 0.66 0.971089
Target:  5'- cCCGgGCcuccccaaAGAcacuGCCGGcGCGCACGCGGg -3'
miRNA:   3'- -GGCgCG--------UCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36535 0.66 0.976513
Target:  5'- gCUGCGCgaggcGGAuuCgGAGAUugACGCGc -3'
miRNA:   3'- -GGCGCG-----UCUuuGgUUCUGugUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 134850 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10 0.66 0.972239
Target:  5'- cCCGCGCGGGGggcGCgGAGAaaaaaaaaauuuuuuC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGgUUCU---------------GuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35173 0.66 0.978693
Target:  5'- aCCGC-CGGggGCaCGcggccuucgaggaGGAgCGCGCGCGGc -3'
miRNA:   3'- -GGCGcGUCuuUG-GU-------------UCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30177 0.66 0.978926
Target:  5'- gCGCucgGCGGAccuGGCCGAcgcggugcgcGGCGCGCGCGc -3'
miRNA:   3'- gGCG---CGUCU---UUGGUU----------CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 48033 0.66 0.973903
Target:  5'- gCCGCGCGcuGGCCgAAGACACcuuguagaaaaGCuGCGGg -3'
miRNA:   3'- -GGCGCGUcuUUGG-UUCUGUG-----------UG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 67859 0.66 0.973903
Target:  5'- gCCGCGCc---ACCAAGucccCGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCu---GUGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.