miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 103581 0.72 0.244873
Target:  5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 82717 0.72 0.268503
Target:  5'- gCGGGCCcgcuucgaGCUCGACaGCgcgcgCCGCCCg- -3'
miRNA:   3'- aGCCCGG--------CGAGUUGcCGa----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 27995 0.72 0.268503
Target:  5'- cUGGGCCGCgcugCAgcgcGCGGCgugCCGCgCUUa -3'
miRNA:   3'- aGCCCGGCGa---GU----UGCCGa--GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 105505 0.72 0.239242
Target:  5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3'
miRNA:   3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13474 0.72 0.239242
Target:  5'- cUCGGGCCGCaccccaCAGCGGCg--GCCUUCc -3'
miRNA:   3'- -AGCCCGGCGa-----GUUGCCGaggCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 768 0.72 0.244873
Target:  5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 34552 0.72 0.239242
Target:  5'- cCGGGCUGCUCGgccgcugcagcgGCGGCagCGCCUg- -3'
miRNA:   3'- aGCCCGGCGAGU------------UGCCGagGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 53665 0.72 0.256465
Target:  5'- cCGGGCCGCUCAACuGCcgCCaGCCg-- -3'
miRNA:   3'- aGCCCGGCGAGUUGcCGa-GG-CGGgag -5'
6501 5' -63.1 NC_001847.1 + 12355 0.72 0.256465
Target:  5'- gUGGGCCugGCUCGggagcgucgGCGGCUgCGgCCUCg -3'
miRNA:   3'- aGCCCGG--CGAGU---------UGCCGAgGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 82632 0.72 0.250614
Target:  5'- cCGGGCCGCgcggCcGCGcGCUCCGUCagCUCc -3'
miRNA:   3'- aGCCCGGCGa---GuUGC-CGAGGCGG--GAG- -5'
6501 5' -63.1 NC_001847.1 + 21440 0.71 0.27469
Target:  5'- gCGGGCCaaaGCUC--CGGCUCC-CCCUUc -3'
miRNA:   3'- aGCCCGG---CGAGuuGCCGAGGcGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 129236 0.71 0.280991
Target:  5'- aUGGGCCcggGCgcacaaucugCGACGGCgcggCCGCCCUg -3'
miRNA:   3'- aGCCCGG---CGa---------GUUGCCGa---GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 1209 0.71 0.287407
Target:  5'- gUCGGGCgccaGCUcCAGCGcGCgCCGCCCg- -3'
miRNA:   3'- -AGCCCGg---CGA-GUUGC-CGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 129609 0.71 0.27469
Target:  5'- cUGGGCCGC-CGucACGaGCgucgCCGCCCUa -3'
miRNA:   3'- aGCCCGGCGaGU--UGC-CGa---GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 3864 0.71 0.287407
Target:  5'- gCGGGCC-CUcCAGCGGCggCgGCCCgUCg -3'
miRNA:   3'- aGCCCGGcGA-GUUGCCGa-GgCGGG-AG- -5'
6501 5' -63.1 NC_001847.1 + 41386 0.71 0.307344
Target:  5'- cCGGGCCGC-CGcCGGCagCCGCgcggCCUCc -3'
miRNA:   3'- aGCCCGGCGaGUuGCCGa-GGCG----GGAG- -5'
6501 5' -63.1 NC_001847.1 + 106677 0.71 0.287407
Target:  5'- gCGGGCC-CUcCAGCGGCggCgGCCCgUCg -3'
miRNA:   3'- aGCCCGGcGA-GUUGCCGa-GgCGGG-AG- -5'
6501 5' -63.1 NC_001847.1 + 16917 0.71 0.280991
Target:  5'- cCGGGCCGCUCGGCGcagacgccGgUCUGCUCa- -3'
miRNA:   3'- aGCCCGGCGAGUUGC--------CgAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 21373 0.71 0.280991
Target:  5'- cUCGGGCCGcCUCgGGCGGCUCgucaGCgacgauuauaCCUCg -3'
miRNA:   3'- -AGCCCGGC-GAG-UUGCCGAGg---CG----------GGAG- -5'
6501 5' -63.1 NC_001847.1 + 104022 0.71 0.287407
Target:  5'- gUCGGGCgccaGCUcCAGCGcGCgCCGCCCg- -3'
miRNA:   3'- -AGCCCGg---CGA-GUUGC-CGaGGCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.