miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 97881 0.7 0.700786
Target:  5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3'
miRNA:   3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 96874 0.73 0.537534
Target:  5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3'
miRNA:   3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 95752 0.69 0.747628
Target:  5'- -gAGCCCGGCCGgcgccgGCUCcccgacggcgucGCGGAGCu -3'
miRNA:   3'- ggUCGGGUCGGUa-----CGAGaa----------CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 91000 0.68 0.826596
Target:  5'- uCCAGCgagacgagagCCAcGCCGUGCcg--GCGGAGCa -3'
miRNA:   3'- -GGUCG----------GGU-CGGUACGagaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 90391 0.67 0.867668
Target:  5'- aCGGCCCccGGCCGuacgUGCUUgugGCGGGccACg -3'
miRNA:   3'- gGUCGGG--UCGGU----ACGAGaa-CGUCU--UG- -5'
6504 3' -54.8 NC_001847.1 + 88649 0.66 0.915613
Target:  5'- gCCuGCUCAG-CGUGCUgUUGCGcGACu -3'
miRNA:   3'- -GGuCGGGUCgGUACGAgAACGUcUUG- -5'
6504 3' -54.8 NC_001847.1 + 87003 0.7 0.700786
Target:  5'- gCCGGCCCGGCgGUuaccugggccgcGC-CUcGCGGGACa -3'
miRNA:   3'- -GGUCGGGUCGgUA------------CGaGAaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 85277 0.69 0.741626
Target:  5'- gCGGCCaAGaCCAUGaUCUUGUGGGACa -3'
miRNA:   3'- gGUCGGgUC-GGUACgAGAACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 85257 0.68 0.799634
Target:  5'- cCCAGCacgUAGCCGUGCagcagCUcGCAGAguGCg -3'
miRNA:   3'- -GGUCGg--GUCGGUACGa----GAaCGUCU--UG- -5'
6504 3' -54.8 NC_001847.1 + 85037 0.7 0.679957
Target:  5'- cCCAGCCCGGCCcccaGCagCUgGCcGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua--CGa-GAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 84917 0.66 0.889667
Target:  5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3'
miRNA:   3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 82862 0.68 0.799634
Target:  5'- --cGUCCGGCaCGUGCUCgcccgUGCGGGcGCg -3'
miRNA:   3'- gguCGGGUCG-GUACGAGa----ACGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 82656 0.71 0.627317
Target:  5'- gUCAGCuCCA-CCAUGCUCUggGCgaAGAACu -3'
miRNA:   3'- -GGUCG-GGUcGGUACGAGAa-CG--UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 82279 0.68 0.817785
Target:  5'- aCGcGCUCGGCCAcGC-CUUGCuGGAGCu -3'
miRNA:   3'- gGU-CGGGUCGGUaCGaGAACG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6504 3' -54.8 NC_001847.1 + 78795 0.76 0.3996
Target:  5'- gCCGGCCCguGGCCAUGUcgcgCUUGUAGuAGCc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGa---GAACGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 78408 0.74 0.464014
Target:  5'- aCAGCUUGGCCA-GCUCgUUGCuGAGCa -3'
miRNA:   3'- gGUCGGGUCGGUaCGAG-AACGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 77498 0.66 0.903136
Target:  5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3'
miRNA:   3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5'
6504 3' -54.8 NC_001847.1 + 75144 0.66 0.915613
Target:  5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3'
miRNA:   3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.