miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 135128 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 135020 0.7 0.43784
Target:  5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3'
miRNA:   3'- cgCCacuCGUUCGUCCC---UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 134821 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 134645 0.8 0.105981
Target:  5'- gGCGGgccgGcAGCAGGCGcGGAGGCGCGGg -3'
miRNA:   3'- -CGCCa---C-UCGUUCGUcCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 134515 0.74 0.283741
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 134457 0.7 0.446726
Target:  5'- uGCGGcaGGGCAAGau-GGcauAGGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGUUCgucCC---UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 134419 0.7 0.455712
Target:  5'- cGCGGgaaGGgAGGgAGGGGGcGCGaCGGCg -3'
miRNA:   3'- -CGCCac-UCgUUCgUCCCUC-CGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 134023 0.69 0.530777
Target:  5'- gGCGGUcucgccAGCGucGCAGGGGcaCGCGGCg -3'
miRNA:   3'- -CGCCAc-----UCGUu-CGUCCCUccGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 133589 0.69 0.502022
Target:  5'- cGCGGgcgcgcuaucGGGCGGGCGGGcuuGG-GCGGCa -3'
miRNA:   3'- -CGCCa---------CUCGUUCGUCCcu-CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 133398 0.7 0.43784
Target:  5'- cGCGGUgGAGUAccucugcgcgcGGCuGGccgcGGCGCGGCg -3'
miRNA:   3'- -CGCCA-CUCGU-----------UCGuCCcu--CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 133146 0.72 0.346526
Target:  5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 132490 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 132429 0.72 0.335279
Target:  5'- cGUGGUGGggcagguucgcaagcGCAAGCuGGaGGGCGCGGa -3'
miRNA:   3'- -CGCCACU---------------CGUUCGuCCcUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 132361 0.68 0.560109
Target:  5'- cGCGGcccugGAggccGCcGGCGGGGGcgccGGCGcCGGCg -3'
miRNA:   3'- -CGCCa----CU----CGuUCGUCCCU----CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 132133 0.7 0.47397
Target:  5'- cGCGGcccGCGAcGCGGuGGAGcgcGCGCGGCu -3'
miRNA:   3'- -CGCCacuCGUU-CGUC-CCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 131909 0.67 0.599862
Target:  5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3'
miRNA:   3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 130865 0.68 0.567022
Target:  5'- gGCGGgggcGGCGccccucaaggccgaAGCGGGGAcugaggcggGGgGCGGCg -3'
miRNA:   3'- -CGCCac--UCGU--------------UCGUCCCU---------CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 130787 0.7 0.429056
Target:  5'- cGCGGUGgaGGCGgccgcggccggGGCGGaGGcGGCcGCGGCc -3'
miRNA:   3'- -CGCCAC--UCGU-----------UCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 130707 0.68 0.579914
Target:  5'- cGCGGaGuGCGccgaggccgaGGgGGcGGAGGCGCGGa -3'
miRNA:   3'- -CGCCaCuCGU----------UCgUC-CCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 130559 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.