Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6511 | 3' | -48.4 | NC_001847.1 | + | 38089 | 0.66 | 0.998359 |
Target: 5'- ---cGCGgucgggGAAAGCAgc-CCGGACGCc -3' miRNA: 3'- uaaaCGUa-----CUUUCGUaccGGCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 42167 | 0.66 | 0.996606 |
Target: 5'- -gUUGCcgGcgGGUGcUGGCgGAAUGCg -3' miRNA: 3'- uaAACGuaCuuUCGU-ACCGgCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 134147 | 0.66 | 0.996367 |
Target: 5'- ---aGCugGUGggGGCAgaaggugcgugcgGGCCG-GCGCa -3' miRNA: 3'- uaaaCG--UACuuUCGUa------------CCGGCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 5795 | 1.1 | 0.009936 |
Target: 5'- cAUUUGCAUGAAAGCAUGGCCGAACGCc -3' miRNA: 3'- -UAAACGUACUUUCGUACCGGCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 51990 | 0.66 | 0.998016 |
Target: 5'- ---gGCGuUGGGAggucGCcgGGCgGGACGCa -3' miRNA: 3'- uaaaCGU-ACUUU----CGuaCCGgCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 33012 | 0.66 | 0.998016 |
Target: 5'- ---gGCcgGggGGCGcgcggggcgaGGCgCGGACGCg -3' miRNA: 3'- uaaaCGuaCuuUCGUa---------CCG-GCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 21000 | 0.66 | 0.997978 |
Target: 5'- --cUGCAUGcuGGUgcGaacucacGCCGAGCGCg -3' miRNA: 3'- uaaACGUACuuUCGuaC-------CGGCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 80822 | 0.66 | 0.997614 |
Target: 5'- ---cGCGUGAGgcgccggauAGCGaGGCCGAcAUGUg -3' miRNA: 3'- uaaaCGUACUU---------UCGUaCCGGCU-UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 81409 | 0.66 | 0.997614 |
Target: 5'- ---cGCGUGA---CAUGGUCGcaGGCGCa -3' miRNA: 3'- uaaaCGUACUuucGUACCGGC--UUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 89664 | 0.66 | 0.997096 |
Target: 5'- cGUUUGCuaaucucGGaCAUGGCCGAggacccgggguauGCGCg -3' miRNA: 3'- -UAAACGuacuu--UC-GUACCGGCU-------------UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 112124 | 0.66 | 0.997147 |
Target: 5'- ---cGCGUGGccgcggcaGAGUcgGUGGCCGAaaaguACGUg -3' miRNA: 3'- uaaaCGUACU--------UUCG--UACCGGCU-----UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 135000 | 0.66 | 0.997614 |
Target: 5'- ---aGUuUGGAAGCAagaUGGCC--GCGCa -3' miRNA: 3'- uaaaCGuACUUUCGU---ACCGGcuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 21618 | 0.66 | 0.998359 |
Target: 5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3' miRNA: 3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 95319 | 0.66 | 0.997147 |
Target: 5'- ---cGCGgcgccGGCAgGGCCGAagGCGCa -3' miRNA: 3'- uaaaCGUacuu-UCGUaCCGGCU--UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 131136 | 0.66 | 0.998359 |
Target: 5'- --cUGCucgGggGGCGgacuguuaacuUGGCCGcgcuGGCGCu -3' miRNA: 3'- uaaACGua-CuuUCGU-----------ACCGGC----UUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 64060 | 0.66 | 0.997614 |
Target: 5'- ---cGCcucUGGccGCGccGGCCGAGCGCc -3' miRNA: 3'- uaaaCGu--ACUuuCGUa-CCGGCUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 94158 | 0.66 | 0.997147 |
Target: 5'- ---aGCAgguGAGCGcGGCCcGGCGCa -3' miRNA: 3'- uaaaCGUacuUUCGUaCCGGcUUGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 28491 | 0.66 | 0.996606 |
Target: 5'- --cUGC-UGAcgccuucuggcgAGGCGUGGCCcGGcaGCGCg -3' miRNA: 3'- uaaACGuACU------------UUCGUACCGG-CU--UGCG- -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 38708 | 0.66 | 0.998359 |
Target: 5'- --gUGCGUGAAGGCAUa--CGAGCa- -3' miRNA: 3'- uaaACGUACUUUCGUAccgGCUUGcg -5' |
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6511 | 3' | -48.4 | NC_001847.1 | + | 52281 | 0.66 | 0.998016 |
Target: 5'- ---cGCAcGGgcGAGCAcGuGCCGGACGUa -3' miRNA: 3'- uaaaCGUaCU--UUCGUaC-CGGCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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