Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6512 | 3' | -68.1 | NC_001847.1 | + | 15128 | 0.66 | 0.366093 |
Target: 5'- cGgcGGcGGuGCUGGCCuugcuacugcgcgucGGGGCCGCUUg -3' miRNA: 3'- -CuuCCaCC-CGGCCGG---------------CCCCGGCGGGu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 125835 | 0.66 | 0.363089 |
Target: 5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3' miRNA: 3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 54586 | 0.66 | 0.363089 |
Target: 5'- -cGGGcUGGGCgGcGCUGGcGGCgcgCGCCCGc -3' miRNA: 3'- cuUCC-ACCCGgC-CGGCC-CCG---GCGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 76355 | 0.66 | 0.363089 |
Target: 5'- -----cGGGCC-GCCGGGGCgGaCCCc -3' miRNA: 3'- cuuccaCCCGGcCGGCCCCGgC-GGGu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 119230 | 0.66 | 0.363089 |
Target: 5'- -cGGGgcggcgGGGCaGGCaUGGGGCCGUCg- -3' miRNA: 3'- cuUCCa-----CCCGgCCG-GCCCCGGCGGgu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 23022 | 0.66 | 0.363089 |
Target: 5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3' miRNA: 3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 119110 | 0.66 | 0.363089 |
Target: 5'- -cGGGgcggcgGGGCaGGCaUGGGGCCGUCg- -3' miRNA: 3'- cuUCCa-----CCCGgCCG-GCCCCGGCGGgu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 68924 | 0.66 | 0.363089 |
Target: 5'- uGAGGUucGGcGCggCGGCCGcGGGCUGCgCCu -3' miRNA: 3'- cUUCCA--CC-CG--GCCGGC-CCCGGCG-GGu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 22923 | 0.66 | 0.363089 |
Target: 5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3' miRNA: 3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 43008 | 0.66 | 0.363089 |
Target: 5'- -cGGG-GGGgCGcGCC-GGGCCGCCgAa -3' miRNA: 3'- cuUCCaCCCgGC-CGGcCCCGGCGGgU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 87920 | 0.66 | 0.355654 |
Target: 5'- cGggGcGUgGGGCUGGgCGcGGCCGCgCAc -3' miRNA: 3'- -CuuC-CA-CCCGGCCgGCcCCGGCGgGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 105960 | 0.66 | 0.355654 |
Target: 5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3' miRNA: 3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 112561 | 0.66 | 0.355654 |
Target: 5'- -cGGGcGGGCCcugccCCGGGGC-GCCCGc -3' miRNA: 3'- cuUCCaCCCGGcc---GGCCCCGgCGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 32099 | 0.66 | 0.355654 |
Target: 5'- gGAGGG-GGGaaacgCGGCUGcGGcCCGCCCGc -3' miRNA: 3'- -CUUCCaCCCg----GCCGGCcCC-GGCGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 77462 | 0.66 | 0.355654 |
Target: 5'- -cGGGcUGGGgCGggcGCCGGGcGCCcgGCCCGg -3' miRNA: 3'- cuUCC-ACCCgGC---CGGCCC-CGG--CGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 9748 | 0.66 | 0.355654 |
Target: 5'- -cGGGcGGGCCcugccCCGGGGC-GCCCGc -3' miRNA: 3'- cuUCCaCCCGGcc---GGCCCCGgCGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 3147 | 0.66 | 0.355654 |
Target: 5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3' miRNA: 3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 120257 | 0.66 | 0.355654 |
Target: 5'- -cAGGcGGGCUuccgugucggGGCUuucgaccauGGGGUCGCCCGg -3' miRNA: 3'- cuUCCaCCCGG----------CCGG---------CCCCGGCGGGU- -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 92801 | 0.66 | 0.355654 |
Target: 5'- cGAGGacguGGCCGGCUGGaGcGCCGCUa- -3' miRNA: 3'- cUUCCac--CCGGCCGGCC-C-CGGCGGgu -5' |
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6512 | 3' | -68.1 | NC_001847.1 | + | 3976 | 0.66 | 0.353444 |
Target: 5'- cGAGGGcgccggGGGCCGGgCGcGcGGCCccgcggggcgccggGCCCGg -3' miRNA: 3'- -CUUCCa-----CCCGGCCgGC-C-CCGG--------------CGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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