miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 3' -68.1 NC_001847.1 + 15128 0.66 0.366093
Target:  5'- cGgcGGcGGuGCUGGCCuugcuacugcgcgucGGGGCCGCUUg -3'
miRNA:   3'- -CuuCCaCC-CGGCCGG---------------CCCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 43008 0.66 0.363089
Target:  5'- -cGGG-GGGgCGcGCC-GGGCCGCCgAa -3'
miRNA:   3'- cuUCCaCCCgGC-CGGcCCCGGCGGgU- -5'
6512 3' -68.1 NC_001847.1 + 22923 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5'
6512 3' -68.1 NC_001847.1 + 68924 0.66 0.363089
Target:  5'- uGAGGUucGGcGCggCGGCCGcGGGCUGCgCCu -3'
miRNA:   3'- cUUCCA--CC-CG--GCCGGC-CCCGGCG-GGu -5'
6512 3' -68.1 NC_001847.1 + 119110 0.66 0.363089
Target:  5'- -cGGGgcggcgGGGCaGGCaUGGGGCCGUCg- -3'
miRNA:   3'- cuUCCa-----CCCGgCCG-GCCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 23022 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5'
6512 3' -68.1 NC_001847.1 + 119230 0.66 0.363089
Target:  5'- -cGGGgcggcgGGGCaGGCaUGGGGCCGUCg- -3'
miRNA:   3'- cuUCCa-----CCCGgCCG-GCCCCGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 76355 0.66 0.363089
Target:  5'- -----cGGGCC-GCCGGGGCgGaCCCc -3'
miRNA:   3'- cuuccaCCCGGcCGGCCCCGgC-GGGu -5'
6512 3' -68.1 NC_001847.1 + 54586 0.66 0.363089
Target:  5'- -cGGGcUGGGCgGcGCUGGcGGCgcgCGCCCGc -3'
miRNA:   3'- cuUCC-ACCCGgC-CGGCC-CCG---GCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 125835 0.66 0.363089
Target:  5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3'
miRNA:   3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5'
6512 3' -68.1 NC_001847.1 + 105960 0.66 0.355654
Target:  5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3'
miRNA:   3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 112561 0.66 0.355654
Target:  5'- -cGGGcGGGCCcugccCCGGGGC-GCCCGc -3'
miRNA:   3'- cuUCCaCCCGGcc---GGCCCCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 32099 0.66 0.355654
Target:  5'- gGAGGG-GGGaaacgCGGCUGcGGcCCGCCCGc -3'
miRNA:   3'- -CUUCCaCCCg----GCCGGCcCC-GGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 77462 0.66 0.355654
Target:  5'- -cGGGcUGGGgCGggcGCCGGGcGCCcgGCCCGg -3'
miRNA:   3'- cuUCC-ACCCgGC---CGGCCC-CGG--CGGGU- -5'
6512 3' -68.1 NC_001847.1 + 9748 0.66 0.355654
Target:  5'- -cGGGcGGGCCcugccCCGGGGC-GCCCGc -3'
miRNA:   3'- cuUCCaCCCGGcc---GGCCCCGgCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 3147 0.66 0.355654
Target:  5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3'
miRNA:   3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5'
6512 3' -68.1 NC_001847.1 + 120257 0.66 0.355654
Target:  5'- -cAGGcGGGCUuccgugucggGGCUuucgaccauGGGGUCGCCCGg -3'
miRNA:   3'- cuUCCaCCCGG----------CCGG---------CCCCGGCGGGU- -5'
6512 3' -68.1 NC_001847.1 + 92801 0.66 0.355654
Target:  5'- cGAGGacguGGCCGGCUGGaGcGCCGCUa- -3'
miRNA:   3'- cUUCCac--CCGGCCGGCC-C-CGGCGGgu -5'
6512 3' -68.1 NC_001847.1 + 87920 0.66 0.355654
Target:  5'- cGggGcGUgGGGCUGGgCGcGGCCGCgCAc -3'
miRNA:   3'- -CuuC-CA-CCCGGCCgGCcCCGGCGgGU- -5'
6512 3' -68.1 NC_001847.1 + 3976 0.66 0.353444
Target:  5'- cGAGGGcgccggGGGCCGGgCGcGcGGCCccgcggggcgccggGCCCGg -3'
miRNA:   3'- -CUUCCa-----CCCGGCCgGC-C-CCGG--------------CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.