miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6513 5' -60 NC_001847.1 + 33680 0.66 0.730075
Target:  5'- gCggGGCUagagGCGCAGGCgcuCGCgGCGcgGCg -3'
miRNA:   3'- aGuaCCGG----UGCGUCCG---GCGgUGCa-CG- -5'
6513 5' -60 NC_001847.1 + 68411 0.66 0.730075
Target:  5'- ---cGGCCAgGUaaGGGUCGCCAacCG-GCa -3'
miRNA:   3'- aguaCCGGUgCG--UCCGGCGGU--GCaCG- -5'
6513 5' -60 NC_001847.1 + 55003 0.66 0.730075
Target:  5'- gUCAUGGCgGCGCuGGa-GuCCAUGcGCg -3'
miRNA:   3'- -AGUACCGgUGCGuCCggC-GGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 28414 0.66 0.730075
Target:  5'- uUCAggcggGGCUuagcgcccugGCGCAcGCCGCCAacuggaaaGUGCc -3'
miRNA:   3'- -AGUa----CCGG----------UGCGUcCGGCGGUg-------CACG- -5'
6513 5' -60 NC_001847.1 + 57937 0.66 0.730075
Target:  5'- ---cGGCC-CGCGGcuCCGUCGCGgGCa -3'
miRNA:   3'- aguaCCGGuGCGUCc-GGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 5234 0.66 0.730075
Target:  5'- gCAUGGCUccgUGCAGGUCuCCGCGggggaggggGCg -3'
miRNA:   3'- aGUACCGGu--GCGUCCGGcGGUGCa--------CG- -5'
6513 5' -60 NC_001847.1 + 117293 0.66 0.730075
Target:  5'- ---cGGCgGCGCuGGCaacgcgaGCCGCGauggGCg -3'
miRNA:   3'- aguaCCGgUGCGuCCGg------CGGUGCa---CG- -5'
6513 5' -60 NC_001847.1 + 133309 0.66 0.730075
Target:  5'- gCcgGGCgCugGaCGGGCgCGCCggACGUGa -3'
miRNA:   3'- aGuaCCG-GugC-GUCCG-GCGG--UGCACg -5'
6513 5' -60 NC_001847.1 + 80726 0.66 0.730075
Target:  5'- cCcgGGCCGCcgAGGCCaaCCGCGgcgGCg -3'
miRNA:   3'- aGuaCCGGUGcgUCCGGc-GGUGCa--CG- -5'
6513 5' -60 NC_001847.1 + 84600 0.66 0.730075
Target:  5'- ---cGGuCCA-GCAGcGCCGCUGCGUcGCc -3'
miRNA:   3'- aguaCC-GGUgCGUC-CGGCGGUGCA-CG- -5'
6513 5' -60 NC_001847.1 + 120951 0.66 0.730075
Target:  5'- -gGUGGCUgAUGUGGGCggacccagCGCCGCGUaaGCg -3'
miRNA:   3'- agUACCGG-UGCGUCCG--------GCGGUGCA--CG- -5'
6513 5' -60 NC_001847.1 + 87633 0.66 0.730075
Target:  5'- cCcgGGCUGCGCuGGaaGCCAacUGCg -3'
miRNA:   3'- aGuaCCGGUGCGuCCggCGGUgcACG- -5'
6513 5' -60 NC_001847.1 + 95787 0.66 0.730075
Target:  5'- nCGgggGGCgGCGCGGGC-GCauuaCugGUGCu -3'
miRNA:   3'- aGUa--CCGgUGCGUCCGgCG----GugCACG- -5'
6513 5' -60 NC_001847.1 + 45852 0.66 0.730075
Target:  5'- gCAcGGCCGagGCcucGGCCGCgGCGcGCg -3'
miRNA:   3'- aGUaCCGGUg-CGu--CCGGCGgUGCaCG- -5'
6513 5' -60 NC_001847.1 + 58046 0.66 0.730075
Target:  5'- ----cGCCgcuaccgcGCGCGGGCCGCCgauugGCGcGCg -3'
miRNA:   3'- aguacCGG--------UGCGUCCGGCGG-----UGCaCG- -5'
6513 5' -60 NC_001847.1 + 36890 0.66 0.730075
Target:  5'- --cUGGCgacUACGCugccccGCCGCCACG-GCg -3'
miRNA:   3'- aguACCG---GUGCGuc----CGGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 25446 0.66 0.730075
Target:  5'- uUCAgcGCCGacUGCAGGCCGagCGCGcGCa -3'
miRNA:   3'- -AGUacCGGU--GCGUCCGGCg-GUGCaCG- -5'
6513 5' -60 NC_001847.1 + 61632 0.66 0.730075
Target:  5'- aCAUGcGCCcgcuggACuGCAGcGCCGCCACc-GCg -3'
miRNA:   3'- aGUAC-CGG------UG-CGUC-CGGCGGUGcaCG- -5'
6513 5' -60 NC_001847.1 + 103304 0.66 0.730075
Target:  5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3'
miRNA:   3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 121722 0.66 0.730075
Target:  5'- uUCAcGGCgCGCGCuGGCgCGCC-CGUc- -3'
miRNA:   3'- -AGUaCCG-GUGCGuCCG-GCGGuGCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.