Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6515 | 5' | -51 | NC_001847.1 | + | 60820 | 0.66 | 0.989088 |
Target: 5'- aCACACUgauggcgcgagggGCGCCCGcgGCGCUgcgCGgcgccaGGg -3' miRNA: 3'- -GUGUGA-------------UGUGGGCa-CGUGAa--GCaa----CC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 134178 | 0.66 | 0.98775 |
Target: 5'- gGCGCauagACGCCCG-GCGCagCGU-GGa -3' miRNA: 3'- gUGUGa---UGUGGGCaCGUGaaGCAaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 94683 | 0.66 | 0.991062 |
Target: 5'- gACGCuUAUGCCCGUGCcgcgcaaguacuggcGCUUCagcagcgaGUUGGc -3' miRNA: 3'- gUGUG-AUGUGGGCACG---------------UGAAG--------CAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 104050 | 0.66 | 0.991768 |
Target: 5'- cCGCGCUGCccgGCCCcaGCGCcgcgUCGUacUGGu -3' miRNA: 3'- -GUGUGAUG---UGGGcaCGUGa---AGCA--ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 39808 | 0.66 | 0.990566 |
Target: 5'- cCugGCUGCGCCCccUGCGcCUUCGg--- -3' miRNA: 3'- -GugUGAUGUGGGc-ACGU-GAAGCaacc -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 28665 | 0.66 | 0.990566 |
Target: 5'- gCGCGCUcgucGCACgaCGUGCGCguaUCGgcGGc -3' miRNA: 3'- -GUGUGA----UGUGg-GCACGUGa--AGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 23521 | 0.66 | 0.992846 |
Target: 5'- gCACACgaggucgcCGCCCGUGaagACgccgUUGUUGGu -3' miRNA: 3'- -GUGUGau------GUGGGCACg--UGa---AGCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 30145 | 0.66 | 0.991768 |
Target: 5'- aCGCGCgGCGCgCCGUGCGCccugggugCG-UGGc -3' miRNA: 3'- -GUGUGaUGUG-GGCACGUGaa------GCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 24795 | 0.66 | 0.989229 |
Target: 5'- cCACACaACGCCCucgcgGC-CUUCGaggUGGg -3' miRNA: 3'- -GUGUGaUGUGGGca---CGuGAAGCa--ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 3742 | 0.66 | 0.989229 |
Target: 5'- gCGCAC-GCGgCCGUGCagcGCUUCGUc-- -3' miRNA: 3'- -GUGUGaUGUgGGCACG---UGAAGCAacc -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 59664 | 0.66 | 0.989229 |
Target: 5'- uCGCGCc-CGCCCGUGCGCUc---UGGc -3' miRNA: 3'- -GUGUGauGUGGGCACGUGAagcaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 72162 | 0.66 | 0.989229 |
Target: 5'- uGCACUACgACCgCGUGUACc-CGcUGGu -3' miRNA: 3'- gUGUGAUG-UGG-GCACGUGaaGCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 57367 | 0.66 | 0.989229 |
Target: 5'- cCGCGCUGgGCCUcccGCACgUCGUagUGGa -3' miRNA: 3'- -GUGUGAUgUGGGca-CGUGaAGCA--ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 66301 | 0.67 | 0.986118 |
Target: 5'- cCGCGCUcGCGCCCGaGCuCUUCGc-GGc -3' miRNA: 3'- -GUGUGA-UGUGGGCaCGuGAAGCaaCC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 50528 | 0.67 | 0.984324 |
Target: 5'- uCGCGCUGgacCACCUG-GCGCUggCGUgcgGGu -3' miRNA: 3'- -GUGUGAU---GUGGGCaCGUGAa-GCAa--CC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 30224 | 0.67 | 0.980216 |
Target: 5'- cCGCGC-GCGCCCGggccgaggUGCGCgugUCGcUGGc -3' miRNA: 3'- -GUGUGaUGUGGGC--------ACGUGa--AGCaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 86259 | 0.67 | 0.984324 |
Target: 5'- gGCACUGCGCCCccGCGCgc---UGGg -3' miRNA: 3'- gUGUGAUGUGGGcaCGUGaagcaACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 49808 | 0.67 | 0.977883 |
Target: 5'- uGCGCUGCugCUGggcGCGCUggCGgccUGGa -3' miRNA: 3'- gUGUGAUGugGGCa--CGUGAa-GCa--ACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 60528 | 0.67 | 0.98236 |
Target: 5'- gGCGCUGC-CCagcUGCACgauggCGUUGGc -3' miRNA: 3'- gUGUGAUGuGGgc-ACGUGaa---GCAACC- -5' |
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6515 | 5' | -51 | NC_001847.1 | + | 52580 | 0.67 | 0.98236 |
Target: 5'- aCGCGCUccguguaccGCGCgCgGUGCGCUUCGg--- -3' miRNA: 3'- -GUGUGA---------UGUG-GgCACGUGAAGCaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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