miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6516 5' -55.7 NC_001847.1 + 103914 0.66 0.850482
Target:  5'- cGCGGCcGCGGGcggcGCCgcCGCgGCCUCc -3'
miRNA:   3'- aUGUCGuCGCUC----UGGauGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 84689 0.66 0.858534
Target:  5'- cGCGGCGcucaCGuGGCCguagaagGCGCUGCCUUu -3'
miRNA:   3'- aUGUCGUc---GCuCUGGa------UGUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 20847 0.66 0.866369
Target:  5'- cGCGGUcgcaaAGCGAG-UCUGCGCUGCg-- -3'
miRNA:   3'- aUGUCG-----UCGCUCuGGAUGUGACGgag -5'
6516 5' -55.7 NC_001847.1 + 77286 0.66 0.849665
Target:  5'- gACGGCGGCGAcccgacaGGCCcgcACACUGaCCg- -3'
miRNA:   3'- aUGUCGUCGCU-------CUGGa--UGUGAC-GGag -5'
6516 5' -55.7 NC_001847.1 + 127359 0.66 0.873979
Target:  5'- aGgGGCGGCGGGGCC--CGa-GCCUCg -3'
miRNA:   3'- aUgUCGUCGCUCUGGauGUgaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 50359 0.66 0.833752
Target:  5'- gACGGCGGCGcGGCCgACGCUaaggacggcGCCg- -3'
miRNA:   3'- aUGUCGUCGCuCUGGaUGUGA---------CGGag -5'
6516 5' -55.7 NC_001847.1 + 103429 0.66 0.850482
Target:  5'- cGCAGCGGCGcgcGGCC--CGC-GCCUCc -3'
miRNA:   3'- aUGUCGUCGCu--CUGGauGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 59497 0.66 0.858534
Target:  5'- -cCGGCAGggggugcgcCGAGGCCgcaccggcuuggUGCGCUGCgCUCa -3'
miRNA:   3'- auGUCGUC---------GCUCUGG------------AUGUGACG-GAG- -5'
6516 5' -55.7 NC_001847.1 + 68225 0.66 0.858534
Target:  5'- gGCcGCGGCGGGGCCgcaaGCAC-GCUUg -3'
miRNA:   3'- aUGuCGUCGCUCUGGa---UGUGaCGGAg -5'
6516 5' -55.7 NC_001847.1 + 17725 0.66 0.842219
Target:  5'- gUACAGCGGCucggcguacGAGGCggcCACgGCCUCg -3'
miRNA:   3'- -AUGUCGUCG---------CUCUGgauGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 105785 0.66 0.858534
Target:  5'- gGCGGCAGCGccgccgGGGCCgcGCGCUggaGCCg- -3'
miRNA:   3'- aUGUCGUCGC------UCUGGa-UGUGA---CGGag -5'
6516 5' -55.7 NC_001847.1 + 62922 0.66 0.850482
Target:  5'- gACAGaCGGCccGGGCgUGCcCUGCCUCc -3'
miRNA:   3'- aUGUC-GUCGc-UCUGgAUGuGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 13863 0.66 0.833752
Target:  5'- gUACAGCcugcuAGCG-GACgCgGCACUGCCg- -3'
miRNA:   3'- -AUGUCG-----UCGCuCUG-GaUGUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 2571 0.66 0.833752
Target:  5'- -uCGGC-GCGGGcGCCUGCGCgGCCg- -3'
miRNA:   3'- auGUCGuCGCUC-UGGAUGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 81364 0.66 0.865595
Target:  5'- cGCGGCGGCugcGGugCUGCcgcccucGCcGCCUCg -3'
miRNA:   3'- aUGUCGUCGc--UCugGAUG-------UGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 36862 0.66 0.850482
Target:  5'- gGCGGCGgccgagcucuacGCGGGGCugcuggcgaCUACGCUGCCcCg -3'
miRNA:   3'- aUGUCGU------------CGCUCUG---------GAUGUGACGGaG- -5'
6516 5' -55.7 NC_001847.1 + 89294 0.66 0.858534
Target:  5'- -cCGGCGGCGaAGAgCgcgACuACUGCUUCu -3'
miRNA:   3'- auGUCGUCGC-UCUgGa--UG-UGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 106628 0.66 0.850482
Target:  5'- gGCGGCGGCGGcGCgCUGCcggGCcacGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUcUG-GAUG---UGa--CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 85676 0.66 0.858534
Target:  5'- aGCAGCAGCGccAGGCCggcgaagACGCcGaCCUg -3'
miRNA:   3'- aUGUCGUCGC--UCUGGa------UGUGaC-GGAg -5'
6516 5' -55.7 NC_001847.1 + 117860 0.66 0.832895
Target:  5'- gACAGaggacgacgccacCGGCGAcugGGCCUGCGgCUGCUUCc -3'
miRNA:   3'- aUGUC-------------GUCGCU---CUGGAUGU-GACGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.