miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6516 5' -55.7 NC_001847.1 + 489 0.67 0.798018
Target:  5'- gGCGGCGGCGGGGCggccGCGC-GCCa- -3'
miRNA:   3'- aUGUCGUCGCUCUGga--UGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 616 0.66 0.850482
Target:  5'- cGCAGCGGCGcgcGGCC--CGC-GCCUCc -3'
miRNA:   3'- aUGUCGUCGCu--CUGGauGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 746 0.69 0.678039
Target:  5'- uUACGGCuaCGAGcccaccacugGCCUGCACcGCCUCg -3'
miRNA:   3'- -AUGUCGucGCUC----------UGGAUGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 819 1.08 0.002227
Target:  5'- cUACAGCAGCGAGACCUACACUGCCUCg -3'
miRNA:   3'- -AUGUCGUCGCUCUGGAUGUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 1063 0.68 0.759734
Target:  5'- aGCGGCGGCGccGGGCUguuCGCUGCUc- -3'
miRNA:   3'- aUGUCGUCGC--UCUGGau-GUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 1101 0.66 0.850482
Target:  5'- cGCGGCcGCGGGcggcGCCgcCGCgGCCUCc -3'
miRNA:   3'- aUGUCGuCGCUC----UGGauGUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 1489 0.72 0.521309
Target:  5'- cGCAGCGGCGGcGCCUcgggguagagccGCGCguaggcgGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUcUGGA------------UGUGa------CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 1933 0.67 0.816241
Target:  5'- cGCGGCGGCcacucGGGCCgccgGCGCUcGuCCUCg -3'
miRNA:   3'- aUGUCGUCGc----UCUGGa---UGUGA-C-GGAG- -5'
6516 5' -55.7 NC_001847.1 + 2104 0.66 0.873979
Target:  5'- cGCGGCGGCG-GGCCgcgaucucgGCcaGC-GCCUCg -3'
miRNA:   3'- aUGUCGUCGCuCUGGa--------UG--UGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 2292 0.67 0.807214
Target:  5'- -uCGGCGGCGGGGCCgccgggcgGCAUggGCCcCa -3'
miRNA:   3'- auGUCGUCGCUCUGGa-------UGUGa-CGGaG- -5'
6516 5' -55.7 NC_001847.1 + 2571 0.66 0.833752
Target:  5'- -uCGGC-GCGGGcGCCUGCGCgGCCg- -3'
miRNA:   3'- auGUCGuCGCUC-UGGAUGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 3815 0.66 0.850482
Target:  5'- gGCGGCGGCGGcGCgCUGCcggGCcacGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUcUG-GAUG---UGa--CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 5935 0.68 0.759734
Target:  5'- gGCGGCGGaCGAcgGGCCcgccCGCUGCUUCu -3'
miRNA:   3'- aUGUCGUC-GCU--CUGGau--GUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 6288 0.69 0.688495
Target:  5'- cGCAgGCAGCG-GACCUcgGCGaggucgGCCUCg -3'
miRNA:   3'- aUGU-CGUCGCuCUGGA--UGUga----CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 7440 0.69 0.688495
Target:  5'- cGCAGUcgcuAGCGcGGACCUACuacauCUGCCa- -3'
miRNA:   3'- aUGUCG----UCGC-UCUGGAUGu----GACGGag -5'
6516 5' -55.7 NC_001847.1 + 8088 0.67 0.788662
Target:  5'- cGCcGCGGCGAGAUCggcgACGCggcGCCa- -3'
miRNA:   3'- aUGuCGUCGCUCUGGa---UGUGa--CGGag -5'
6516 5' -55.7 NC_001847.1 + 11664 0.73 0.481472
Target:  5'- gGCGGCGGUGAagggGGCgCUGCAUcgGCCUCa -3'
miRNA:   3'- aUGUCGUCGCU----CUG-GAUGUGa-CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 13428 0.77 0.294733
Target:  5'- cGCGG-AGCGGGGCCUGCGCUGgCUg -3'
miRNA:   3'- aUGUCgUCGCUCUGGAUGUGACgGAg -5'
6516 5' -55.7 NC_001847.1 + 13545 0.67 0.816241
Target:  5'- --aGGCAGCGcGACgCUGCACgacGCCg- -3'
miRNA:   3'- augUCGUCGCuCUG-GAUGUGa--CGGag -5'
6516 5' -55.7 NC_001847.1 + 13863 0.66 0.833752
Target:  5'- gUACAGCcugcuAGCG-GACgCgGCACUGCCg- -3'
miRNA:   3'- -AUGUCG-----UCGCuCUG-GaUGUGACGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.