miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6516 5' -55.7 NC_001847.1 + 47766 0.7 0.625344
Target:  5'- cACAGCAGCuuguagucGGGCC-ACGCgucgGCCUCg -3'
miRNA:   3'- aUGUCGUCGc-------UCUGGaUGUGa---CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 130257 0.72 0.501216
Target:  5'- cGCAGCGGCGcggGGGcCCUGcCGCUGCC-Cg -3'
miRNA:   3'- aUGUCGUCGC---UCU-GGAU-GUGACGGaG- -5'
6516 5' -55.7 NC_001847.1 + 89507 0.72 0.511222
Target:  5'- uUGCGGCAGCGcGcGCC-GCGCUGCCg- -3'
miRNA:   3'- -AUGUCGUCGCuC-UGGaUGUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 104302 0.72 0.521309
Target:  5'- cGCAGCGGCGGcGCCUcgggguagagccGCGCguaggcgGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUcUGGA------------UGUGa------CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 131831 0.72 0.541708
Target:  5'- gGCGGCAGCGGcGCCcGCGCcGCgCUCg -3'
miRNA:   3'- aUGUCGUCGCUcUGGaUGUGaCG-GAG- -5'
6516 5' -55.7 NC_001847.1 + 53016 0.71 0.552007
Target:  5'- gACAGCGGCG-GcCgCUGCGCgcucggGCCUCg -3'
miRNA:   3'- aUGUCGUCGCuCuG-GAUGUGa-----CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 61944 0.71 0.552007
Target:  5'- aGCGGCGGCGcGGCCcGCGCggGCCg- -3'
miRNA:   3'- aUGUCGUCGCuCUGGaUGUGa-CGGag -5'
6516 5' -55.7 NC_001847.1 + 29363 0.71 0.583229
Target:  5'- aACAGCGGCGAccgcgcggcGGCCggaGCUGCCg- -3'
miRNA:   3'- aUGUCGUCGCU---------CUGGaugUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 48639 0.7 0.614786
Target:  5'- cGCGGCGGCGGGgcgccGCCgccccCGCaGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUC-----UGGau---GUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 17585 0.72 0.500221
Target:  5'- aGCAGCacgGGCGGGGCCcgcggaaagggguUGCGCacgGCCUCg -3'
miRNA:   3'- aUGUCG---UCGCUCUGG-------------AUGUGa--CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 36459 0.73 0.481472
Target:  5'- cGCGGCugugugAGCGGGACCUGCAcCUGCg-- -3'
miRNA:   3'- aUGUCG------UCGCUCUGGAUGU-GACGgag -5'
6516 5' -55.7 NC_001847.1 + 15090 0.73 0.481472
Target:  5'- cUGCGGCAGCGGGGCC-GCGCUcauGCUg- -3'
miRNA:   3'- -AUGUCGUCGCUCUGGaUGUGA---CGGag -5'
6516 5' -55.7 NC_001847.1 + 49466 0.79 0.224777
Target:  5'- cACGGCGGCGAGcGCCUGCGC-GCCa- -3'
miRNA:   3'- aUGUCGUCGCUC-UGGAUGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 13428 0.77 0.294733
Target:  5'- cGCGG-AGCGGGGCCUGCGCUGgCUg -3'
miRNA:   3'- aUGUCgUCGCUCUGGAUGUGACgGAg -5'
6516 5' -55.7 NC_001847.1 + 123762 0.77 0.294733
Target:  5'- gAUAGCAGCGGcccuGACUUGCAUUGgCCUCg -3'
miRNA:   3'- aUGUCGUCGCU----CUGGAUGUGAC-GGAG- -5'
6516 5' -55.7 NC_001847.1 + 81233 0.75 0.355547
Target:  5'- gGCAGCGGCGgcgggccaggcuGGGCCUGcCGCUGCUUUc -3'
miRNA:   3'- aUGUCGUCGC------------UCUGGAU-GUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 18854 0.75 0.380523
Target:  5'- cACGGguCAGCGGGGC--ACGCUGCCUCg -3'
miRNA:   3'- aUGUC--GUCGCUCUGgaUGUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 76604 0.75 0.389105
Target:  5'- gGCGGCGGCGaAGACCgcgGCgGCCUCu -3'
miRNA:   3'- aUGUCGUCGC-UCUGGaugUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 34110 0.74 0.4156
Target:  5'- cGCGGCGGCGGaGCCUGCGgcgcCUGCCg- -3'
miRNA:   3'- aUGUCGUCGCUcUGGAUGU----GACGGag -5'
6516 5' -55.7 NC_001847.1 + 76481 0.74 0.433864
Target:  5'- cACGGCAGCGGcGCCUGCAgcGCCUg -3'
miRNA:   3'- aUGUCGUCGCUcUGGAUGUgaCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.