miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6516 5' -55.7 NC_001847.1 + 819 1.08 0.002227
Target:  5'- cUACAGCAGCGAGACCUACACUGCCUCg -3'
miRNA:   3'- -AUGUCGUCGCUCUGGAUGUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 49466 0.79 0.224777
Target:  5'- cACGGCGGCGAGcGCCUGCGC-GCCa- -3'
miRNA:   3'- aUGUCGUCGCUC-UGGAUGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 13428 0.77 0.294733
Target:  5'- cGCGG-AGCGGGGCCUGCGCUGgCUg -3'
miRNA:   3'- aUGUCgUCGCUCUGGAUGUGACgGAg -5'
6516 5' -55.7 NC_001847.1 + 123762 0.77 0.294733
Target:  5'- gAUAGCAGCGGcccuGACUUGCAUUGgCCUCg -3'
miRNA:   3'- aUGUCGUCGCU----CUGGAUGUGAC-GGAG- -5'
6516 5' -55.7 NC_001847.1 + 81233 0.75 0.355547
Target:  5'- gGCAGCGGCGgcgggccaggcuGGGCCUGcCGCUGCUUUc -3'
miRNA:   3'- aUGUCGUCGC------------UCUGGAU-GUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 106788 0.75 0.380523
Target:  5'- cUGCAGCAGCGGGcggaugacgGCC-GCGCUGCC-Cg -3'
miRNA:   3'- -AUGUCGUCGCUC---------UGGaUGUGACGGaG- -5'
6516 5' -55.7 NC_001847.1 + 18854 0.75 0.380523
Target:  5'- cACGGguCAGCGGGGC--ACGCUGCCUCg -3'
miRNA:   3'- aUGUC--GUCGCUCUGgaUGUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 76604 0.75 0.389105
Target:  5'- gGCGGCGGCGaAGACCgcgGCgGCCUCu -3'
miRNA:   3'- aUGUCGUCGC-UCUGGaugUGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 37456 0.75 0.389105
Target:  5'- cGCAGCAGCG-GGCCUGCGuugGCCg- -3'
miRNA:   3'- aUGUCGUCGCuCUGGAUGUga-CGGag -5'
6516 5' -55.7 NC_001847.1 + 34110 0.74 0.4156
Target:  5'- cGCGGCGGCGGaGCCUGCGgcgcCUGCCg- -3'
miRNA:   3'- aUGUCGUCGCUcUGGAUGU----GACGGag -5'
6516 5' -55.7 NC_001847.1 + 129022 0.74 0.433864
Target:  5'- gAUGGCGGCGAGGCgCUcGCGCcgcGCCUCg -3'
miRNA:   3'- aUGUCGUCGCUCUG-GA-UGUGa--CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 45634 0.74 0.433864
Target:  5'- gGCGGCAGCGcGGCgcGCGCUGCCg- -3'
miRNA:   3'- aUGUCGUCGCuCUGgaUGUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 76481 0.74 0.433864
Target:  5'- cACGGCAGCGGcGCCUGCAgcGCCUg -3'
miRNA:   3'- aUGUCGUCGCUcUGGAUGUgaCGGAg -5'
6516 5' -55.7 NC_001847.1 + 118124 0.73 0.462112
Target:  5'- gAgGGCGGCGAGGCCgucugcgaggcGCGCUGCgUCc -3'
miRNA:   3'- aUgUCGUCGCUCUGGa----------UGUGACGgAG- -5'
6516 5' -55.7 NC_001847.1 + 126519 0.73 0.471741
Target:  5'- cGCAGCggccgcucccccGGCGGGGCUUGCGCUGCg-- -3'
miRNA:   3'- aUGUCG------------UCGCUCUGGAUGUGACGgag -5'
6516 5' -55.7 NC_001847.1 + 108697 0.73 0.471741
Target:  5'- aACAGCcGCGcGGCCUAcCGCUGCCcCg -3'
miRNA:   3'- aUGUCGuCGCuCUGGAU-GUGACGGaG- -5'
6516 5' -55.7 NC_001847.1 + 67122 0.73 0.481472
Target:  5'- gUGCAGguGCGgcucaucccgcGGACCUACAaUGCCUg -3'
miRNA:   3'- -AUGUCguCGC-----------UCUGGAUGUgACGGAg -5'
6516 5' -55.7 NC_001847.1 + 11664 0.73 0.481472
Target:  5'- gGCGGCGGUGAagggGGCgCUGCAUcgGCCUCa -3'
miRNA:   3'- aUGUCGUCGCU----CUG-GAUGUGa-CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 15090 0.73 0.481472
Target:  5'- cUGCGGCAGCGGGGCC-GCGCUcauGCUg- -3'
miRNA:   3'- -AUGUCGUCGCUCUGGaUGUGA---CGGag -5'
6516 5' -55.7 NC_001847.1 + 36459 0.73 0.481472
Target:  5'- cGCGGCugugugAGCGGGACCUGCAcCUGCg-- -3'
miRNA:   3'- aUGUCG------UCGCUCUGGAUGU-GACGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.