miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 27110 0.66 0.990396
Target:  5'- gAGGuCGCGCCAagccucuucgACGUCGCGAAa---- -3'
miRNA:   3'- aUCU-GCGCGGU----------UGUAGUGCUUguaca -5'
6517 5' -50.6 NC_001847.1 + 52992 0.66 0.989011
Target:  5'- gGGACGCGCaGGCAUgGCGGAg---- -3'
miRNA:   3'- aUCUGCGCGgUUGUAgUGCUUguaca -5'
6517 5' -50.6 NC_001847.1 + 15300 0.66 0.987476
Target:  5'- cUGGcuGCGCGCgGGCGUgCGCGAcccguACAUGa -3'
miRNA:   3'- -AUC--UGCGCGgUUGUA-GUGCU-----UGUACa -5'
6517 5' -50.6 NC_001847.1 + 49728 0.66 0.987476
Target:  5'- aAGugGgCGCCGGCGagGCGGugcGCGUGc -3'
miRNA:   3'- aUCugC-GCGGUUGUagUGCU---UGUACa -5'
6517 5' -50.6 NC_001847.1 + 5763 0.66 0.983914
Target:  5'- -cGGCGCGCCAACGcgaagCGCG-GCGUc- -3'
miRNA:   3'- auCUGCGCGGUUGUa----GUGCuUGUAca -5'
6517 5' -50.6 NC_001847.1 + 117768 0.66 0.983718
Target:  5'- aUGGugGgCGCCGACAUCcacaaauaccccuGCGGGC-UGg -3'
miRNA:   3'- -AUCugC-GCGGUUGUAG-------------UGCUUGuACa -5'
6517 5' -50.6 NC_001847.1 + 37917 0.66 0.989011
Target:  5'- --cGCGUGCCGACGgcgcagCugGAGCAgcUGUc -3'
miRNA:   3'- aucUGCGCGGUUGUa-----GugCUUGU--ACA- -5'
6517 5' -50.6 NC_001847.1 + 21508 0.66 0.99164
Target:  5'- cGGGCGCGCCucggcgggGGCcgCGCGGGCc--- -3'
miRNA:   3'- aUCUGCGCGG--------UUGuaGUGCUUGuaca -5'
6517 5' -50.6 NC_001847.1 + 21539 0.66 0.99164
Target:  5'- --aACGCGCCcaagcuggcACAUCGCGuguGCGUGa -3'
miRNA:   3'- aucUGCGCGGu--------UGUAGUGCu--UGUACa -5'
6517 5' -50.6 NC_001847.1 + 3709 0.66 0.990396
Target:  5'- gUAGGCGCGgCAAUcgCGCGcGCcgGc -3'
miRNA:   3'- -AUCUGCGCgGUUGuaGUGCuUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 87932 0.66 0.987476
Target:  5'- cUGGGCGCgGCCGcGCA-CGCGGugaGCGUGUu -3'
miRNA:   3'- -AUCUGCG-CGGU-UGUaGUGCU---UGUACA- -5'
6517 5' -50.6 NC_001847.1 + 133322 0.66 0.991281
Target:  5'- cGGGCGCGCCgGACGUgagcgcgcucggcgCGCaGGGCGUGc -3'
miRNA:   3'- aUCUGCGCGG-UUGUA--------------GUG-CUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 43715 0.66 0.99164
Target:  5'- --uGCGCGCgCuGCG-CGCGGACGUGg -3'
miRNA:   3'- aucUGCGCG-GuUGUaGUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 68068 0.66 0.99164
Target:  5'- -cGGCGCGCCugcGGCGggGCGAACGc-- -3'
miRNA:   3'- auCUGCGCGG---UUGUagUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 47872 0.66 0.99164
Target:  5'- cGGGCGCGCgCAGCG-CGCGcGCGc-- -3'
miRNA:   3'- aUCUGCGCG-GUUGUaGUGCuUGUaca -5'
6517 5' -50.6 NC_001847.1 + 58109 0.66 0.990396
Target:  5'- -cGAUG-GCCGACGUCGgGGggGCAUGa -3'
miRNA:   3'- auCUGCgCGGUUGUAGUgCU--UGUACa -5'
6517 5' -50.6 NC_001847.1 + 134021 0.66 0.983914
Target:  5'- cGGGCGgucuCGCCAGCGUCGCagGGGCAc-- -3'
miRNA:   3'- aUCUGC----GCGGUUGUAGUG--CUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 72765 0.66 0.99164
Target:  5'- aAGACGCGUCGgGCggCGCG-GCGUGc -3'
miRNA:   3'- aUCUGCGCGGU-UGuaGUGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 45393 0.66 0.990396
Target:  5'- aGGugGCGCCGACGgugCcuaGGAgGUGg -3'
miRNA:   3'- aUCugCGCGGUUGUa--Gug-CUUgUACa -5'
6517 5' -50.6 NC_001847.1 + 63092 0.66 0.990396
Target:  5'- --uGCGCGCCAACcgC-CGcGCGUGc -3'
miRNA:   3'- aucUGCGCGGUUGuaGuGCuUGUACa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.