miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 35984 0.7 0.905054
Target:  5'- aAGGCGCGCgCAGCcgCgcugcaggcggccGCGGGCGUGg -3'
miRNA:   3'- aUCUGCGCG-GUUGuaG-------------UGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 111051 0.73 0.809667
Target:  5'- gGGAccCGCGCCAGCucUCACGAcCGUGc -3'
miRNA:   3'- aUCU--GCGCGGUUGu-AGUGCUuGUACa -5'
6517 5' -50.6 NC_001847.1 + 46605 0.72 0.853668
Target:  5'- -cGGCGCgGCCucGCGgcgCACGAGCGUGg -3'
miRNA:   3'- auCUGCG-CGGu-UGUa--GUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 33436 0.71 0.869758
Target:  5'- cGGGCGC-UCGGCGUCGCGGGCGUc- -3'
miRNA:   3'- aUCUGCGcGGUUGUAGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 120188 0.71 0.877448
Target:  5'- aUGGugGUGCUGGCcgCGCGAGCGg-- -3'
miRNA:   3'- -AUCugCGCGGUUGuaGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 78661 0.71 0.892089
Target:  5'- --cGCGCGCCuGCGUCGCcGGCGUGc -3'
miRNA:   3'- aucUGCGCGGuUGUAGUGcUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 93298 0.71 0.892089
Target:  5'- -cGGCGCGCaGGCcgCGCGcGCGUGUg -3'
miRNA:   3'- auCUGCGCGgUUGuaGUGCuUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 105032 0.7 0.896284
Target:  5'- gUAGGC-CGCCAGCGccgcggcgcugggCGCGGGCGUGUg -3'
miRNA:   3'- -AUCUGcGCGGUUGUa------------GUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 9933 0.7 0.899029
Target:  5'- cAGGCGgcUGCCAGCGUCugGGACucgGa -3'
miRNA:   3'- aUCUGC--GCGGUUGUAGugCUUGua-Ca -5'
6517 5' -50.6 NC_001847.1 + 3804 0.73 0.807805
Target:  5'- -cGGCGUGCCGGCAcggggcgucggcCGCGAGCGUGg -3'
miRNA:   3'- auCUGCGCGGUUGUa-----------GUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 116663 0.73 0.800289
Target:  5'- --cGCGCGCUAcgacuGCcgCACGGACGUGUg -3'
miRNA:   3'- aucUGCGCGGU-----UGuaGUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 36827 0.73 0.781032
Target:  5'- -cGGCGCGCCGACugggggcUgGCGGACGUGc -3'
miRNA:   3'- auCUGCGCGGUUGu------AgUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 84741 0.75 0.666765
Target:  5'- cAGGCGCGCacCAACcgcagCACGAGCAUGg -3'
miRNA:   3'- aUCUGCGCG--GUUGua---GUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 50170 0.75 0.677521
Target:  5'- gAGGCG-GCCAugAgCACGAGCGUGUu -3'
miRNA:   3'- aUCUGCgCGGUugUaGUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 103847 0.74 0.720024
Target:  5'- -cGGCGCGCCGcaGCAgCACGAGCGUc- -3'
miRNA:   3'- auCUGCGCGGU--UGUaGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 29427 0.74 0.751055
Target:  5'- --uGCGCGCCAGCGagcgCugGGGCGUGg -3'
miRNA:   3'- aucUGCGCGGUUGUa---GugCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 9531 0.74 0.751055
Target:  5'- -cGGCGCGCUAGCGUC-CGuGCGUGc -3'
miRNA:   3'- auCUGCGCGGUUGUAGuGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 51982 0.74 0.761179
Target:  5'- cUGGGUGCGCCGgcGCAUCGCGGACGc-- -3'
miRNA:   3'- -AUCUGCGCGGU--UGUAGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 124528 0.74 0.761179
Target:  5'- aGGACcaGCGCCAGCAgggCGCGGGCcgGc -3'
miRNA:   3'- aUCUG--CGCGGUUGUa--GUGCUUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 81123 0.73 0.771175
Target:  5'- cAGAgCGCGCCGcGCGUCGgacCGGACGUGUu -3'
miRNA:   3'- aUCU-GCGCGGU-UGUAGU---GCUUGUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.