miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 1884 1.07 0.010167
Target:  5'- uUAGACGCGCCAACAUCACGAACAUGUa -3'
miRNA:   3'- -AUCUGCGCGGUUGUAGUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 32371 0.82 0.332453
Target:  5'- gGGGgGCGCCGGCGUCGCGGGCGUc- -3'
miRNA:   3'- aUCUgCGCGGUUGUAGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 97788 0.81 0.36531
Target:  5'- gAGACGCGCCAGCuccgcacgGUCGCGcGCGUGg -3'
miRNA:   3'- aUCUGCGCGGUUG--------UAGUGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 37569 0.76 0.634348
Target:  5'- cGGGCgGCGCCAGC-UCACGGACAc-- -3'
miRNA:   3'- aUCUG-CGCGGUUGuAGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 71611 0.76 0.645168
Target:  5'- cAGGCgGCGCCAGCAgCGCGGACAc-- -3'
miRNA:   3'- aUCUG-CGCGGUUGUaGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 97322 0.76 0.655977
Target:  5'- cAGGCGCGUCGGCGUCGCGcccgcccggccGCGUGUc -3'
miRNA:   3'- aUCUGCGCGGUUGUAGUGCu----------UGUACA- -5'
6517 5' -50.6 NC_001847.1 + 84741 0.75 0.666765
Target:  5'- cAGGCGCGCacCAACcgcagCACGAGCAUGg -3'
miRNA:   3'- aUCUGCGCG--GUUGua---GUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 50170 0.75 0.677521
Target:  5'- gAGGCG-GCCAugAgCACGAGCGUGUu -3'
miRNA:   3'- aUCUGCgCGGUugUaGUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 103847 0.74 0.720024
Target:  5'- -cGGCGCGCCGcaGCAgCACGAGCGUc- -3'
miRNA:   3'- auCUGCGCGGU--UGUaGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 1034 0.74 0.720024
Target:  5'- -cGGCGCGCCGcaGCAgCACGAGCGUc- -3'
miRNA:   3'- auCUGCGCGGU--UGUaGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 13422 0.74 0.720024
Target:  5'- cGGGCGCGCCAGCG-CGCGc-CGUGa -3'
miRNA:   3'- aUCUGCGCGGUUGUaGUGCuuGUACa -5'
6517 5' -50.6 NC_001847.1 + 104136 0.74 0.730467
Target:  5'- --cGCGCGCCGGCAaCGCcGGACAUGg -3'
miRNA:   3'- aucUGCGCGGUUGUaGUG-CUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 9531 0.74 0.751055
Target:  5'- -cGGCGCGCUAGCGUC-CGuGCGUGc -3'
miRNA:   3'- auCUGCGCGGUUGUAGuGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 29427 0.74 0.751055
Target:  5'- --uGCGCGCCAGCGagcgCugGGGCGUGg -3'
miRNA:   3'- aucUGCGCGGUUGUa---GugCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 21715 0.74 0.761179
Target:  5'- aGGACcaGCGCCAGCAgggCGCGGGCcgGc -3'
miRNA:   3'- aUCUG--CGCGGUUGUa--GUGCUUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 51982 0.74 0.761179
Target:  5'- cUGGGUGCGCCGgcGCAUCGCGGACGc-- -3'
miRNA:   3'- -AUCUGCGCGGU--UGUAGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 124528 0.74 0.761179
Target:  5'- aGGACcaGCGCCAGCAgggCGCGGGCcgGc -3'
miRNA:   3'- aUCUG--CGCGGUUGUa--GUGCUUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 81123 0.73 0.771175
Target:  5'- cAGAgCGCGCCGcGCGUCGgacCGGACGUGUu -3'
miRNA:   3'- aUCU-GCGCGGU-UGUAGU---GCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 72260 0.73 0.781032
Target:  5'- aAGACGUGCCGuuuuUCaACGAACAUGa -3'
miRNA:   3'- aUCUGCGCGGUugu-AG-UGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 36827 0.73 0.781032
Target:  5'- -cGGCGCGCCGACugggggcUgGCGGACGUGc -3'
miRNA:   3'- auCUGCGCGGUUGu------AgUGCUUGUACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.