miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 1034 0.74 0.720024
Target:  5'- -cGGCGCGCCGcaGCAgCACGAGCGUc- -3'
miRNA:   3'- auCUGCGCGGU--UGUaGUGCUUGUAca -5'
6517 5' -50.6 NC_001847.1 + 1884 1.07 0.010167
Target:  5'- uUAGACGCGCCAACAUCACGAACAUGUa -3'
miRNA:   3'- -AUCUGCGCGGUUGUAGUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 2219 0.7 0.896284
Target:  5'- gUAGGC-CGCCAGCGccgcggcgcugggCGCGGGCGUGUg -3'
miRNA:   3'- -AUCUGcGCGGUUGUa------------GUGCUUGUACA- -5'
6517 5' -50.6 NC_001847.1 + 3482 0.7 0.926451
Target:  5'- -cGGCGCGCCGagagcucgcacaugaGCcgCGCGAGCuucGUGUa -3'
miRNA:   3'- auCUGCGCGGU---------------UGuaGUGCUUG---UACA- -5'
6517 5' -50.6 NC_001847.1 + 3571 0.68 0.954329
Target:  5'- cAGGCGCGCCAGCugcagguccgggccCGCGAGCu--- -3'
miRNA:   3'- aUCUGCGCGGUUGua------------GUGCUUGuaca -5'
6517 5' -50.6 NC_001847.1 + 3709 0.66 0.990396
Target:  5'- gUAGGCGCGgCAAUcgCGCGcGCcgGc -3'
miRNA:   3'- -AUCUGCGCgGUUGuaGUGCuUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 3804 0.73 0.807805
Target:  5'- -cGGCGUGCCGGCAcggggcgucggcCGCGAGCGUGg -3'
miRNA:   3'- auCUGCGCGGUUGUa-----------GUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 4663 0.68 0.961755
Target:  5'- -cGACGCGCCG-CGUCGagcaGGGCcgGg -3'
miRNA:   3'- auCUGCGCGGUuGUAGUg---CUUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 4786 0.67 0.979633
Target:  5'- gGGGCGUuCCAGCAUgACG-GCAUGc -3'
miRNA:   3'- aUCUGCGcGGUUGUAgUGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 5763 0.66 0.983914
Target:  5'- -cGGCGCGCCAACGcgaagCGCG-GCGUc- -3'
miRNA:   3'- auCUGCGCGGUUGUa----GUGCuUGUAca -5'
6517 5' -50.6 NC_001847.1 + 8238 0.73 0.809667
Target:  5'- gGGAccCGCGCCAGCucUCACGAcCGUGc -3'
miRNA:   3'- aUCU--GCGCGGUUGu-AGUGCUuGUACa -5'
6517 5' -50.6 NC_001847.1 + 9531 0.74 0.751055
Target:  5'- -cGGCGCGCUAGCGUC-CGuGCGUGc -3'
miRNA:   3'- auCUGCGCGGUUGUAGuGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 9933 0.7 0.899029
Target:  5'- cAGGCGgcUGCCAGCGUCugGGACucgGa -3'
miRNA:   3'- aUCUGC--GCGGUUGUAGugCUUGua-Ca -5'
6517 5' -50.6 NC_001847.1 + 13016 0.68 0.961755
Target:  5'- --uGCGCGCCGGcCGUCGCGAccuGCAg-- -3'
miRNA:   3'- aucUGCGCGGUU-GUAGUGCU---UGUaca -5'
6517 5' -50.6 NC_001847.1 + 13422 0.74 0.720024
Target:  5'- cGGGCGCGCCAGCG-CGCGc-CGUGa -3'
miRNA:   3'- aUCUGCGCGGUUGUaGUGCuuGUACa -5'
6517 5' -50.6 NC_001847.1 + 13508 0.67 0.979633
Target:  5'- aAGuGCGCGCCAAgAUCccguACGAGCGg-- -3'
miRNA:   3'- aUC-UGCGCGGUUgUAG----UGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 14713 0.66 0.989011
Target:  5'- -cGACGCGCgGGCAggagGCGAACGcgGUc -3'
miRNA:   3'- auCUGCGCGgUUGUag--UGCUUGUa-CA- -5'
6517 5' -50.6 NC_001847.1 + 15300 0.66 0.987476
Target:  5'- cUGGcuGCGCGCgGGCGUgCGCGAcccguACAUGa -3'
miRNA:   3'- -AUC--UGCGCGgUUGUA-GUGCU-----UGUACa -5'
6517 5' -50.6 NC_001847.1 + 16833 0.67 0.972869
Target:  5'- cGGugGCGCgGGCAUCggggcggcgcucgagGCGAGCGg-- -3'
miRNA:   3'- aUCugCGCGgUUGUAG---------------UGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 18778 0.69 0.949613
Target:  5'- gUAG-CGCGCCAGCAcCACGcACAc-- -3'
miRNA:   3'- -AUCuGCGCGGUUGUaGUGCuUGUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.