Results 1 - 20 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 81579 | 0.66 | 0.950695 |
Target: 5'- cGGGGCCGGc--GGCUaCGGGagCGUCGUu -3' miRNA: 3'- -UCUCGGCUucuCCGA-GUUCa-GCAGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 35341 | 0.66 | 0.926634 |
Target: 5'- uGGAgcuGCCGAGcGAGGCUCugaUCGcgagCGCg -3' miRNA: 3'- -UCU---CGGCUU-CUCCGAGuucAGCa---GCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 126229 | 0.66 | 0.926634 |
Target: 5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3' miRNA: 3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 114100 | 0.66 | 0.931938 |
Target: 5'- cAGGGCCGggGGucucGGggCAAGcUUGcUCGCa -3' miRNA: 3'- -UCUCGGCuuCU----CCgaGUUC-AGC-AGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 70366 | 0.66 | 0.931938 |
Target: 5'- aAGAG-CGAGGGGGCgccggggcgCGAGcUCG-CGCu -3' miRNA: 3'- -UCUCgGCUUCUCCGa--------GUUC-AGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 80723 | 0.66 | 0.931938 |
Target: 5'- ---aCCGGagGGAGGCgaucuUCAAGUCG-CGCg -3' miRNA: 3'- ucucGGCU--UCUCCG-----AGUUCAGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 19250 | 0.66 | 0.941806 |
Target: 5'- cGAGCCGGccaAGcGGCgCGAGcCGgcggCGCa -3' miRNA: 3'- uCUCGGCU---UCuCCGaGUUCaGCa---GCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 54532 | 0.66 | 0.941806 |
Target: 5'- cGGGGCCGuccGGGGGCgcagacggCGGGggCGgCGCg -3' miRNA: 3'- -UCUCGGCu--UCUCCGa-------GUUCa-GCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 129951 | 0.66 | 0.941806 |
Target: 5'- gAGAGCCGgcGAGGgCUUcucccgCGcCGCg -3' miRNA: 3'- -UCUCGGCuuCUCC-GAGuuca--GCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 16964 | 0.66 | 0.950695 |
Target: 5'- gAGGGCCGGgcggcagauugAGGGGCaccgUCAGGaCGUCcuugGCa -3' miRNA: 3'- -UCUCGGCU-----------UCUCCG----AGUUCaGCAG----CG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 110447 | 0.66 | 0.941806 |
Target: 5'- uGGAGCgCGAGG-GGCU-AGG-CGUCGa -3' miRNA: 3'- -UCUCG-GCUUCuCCGAgUUCaGCAGCg -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 11851 | 0.66 | 0.926634 |
Target: 5'- -uAGCgGAGGAuGGaCUUGAGUCG-CGCu -3' miRNA: 3'- ucUCGgCUUCU-CC-GAGUUCAGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 119129 | 0.66 | 0.936995 |
Target: 5'- uGGGGCCGucGAuGGCgagCucGUCGgCGCc -3' miRNA: 3'- -UCUCGGCuuCU-CCGa--GuuCAGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 104599 | 0.66 | 0.926634 |
Target: 5'- cGGAGCCGcgcGAcGaGCUCGGcGaCGUCGCg -3' miRNA: 3'- -UCUCGGCuu-CU-C-CGAGUU-CaGCAGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 23416 | 0.66 | 0.926634 |
Target: 5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3' miRNA: 3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 104830 | 0.66 | 0.946372 |
Target: 5'- --cGCCGggGGGGCg--GG-CGUcCGCa -3' miRNA: 3'- ucuCGGCuuCUCCGaguUCaGCA-GCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 27138 | 0.66 | 0.941806 |
Target: 5'- gAGAGCCGgcGAGGgCUUcucccgCGcCGCg -3' miRNA: 3'- -UCUCGGCuuCUCC-GAGuuca--GCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 977 | 0.66 | 0.926634 |
Target: 5'- cGGGCCGgcGGGGCUUc---CGcCGCg -3' miRNA: 3'- uCUCGGCuuCUCCGAGuucaGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 61451 | 0.66 | 0.936995 |
Target: 5'- cGGGCgCGgcGAGGC---GGUCG-CGCa -3' miRNA: 3'- uCUCG-GCuuCUCCGaguUCAGCaGCG- -5' |
|||||||
6518 | 5' | -54.2 | NC_001847.1 | + | 51852 | 0.66 | 0.936995 |
Target: 5'- cGGGUCGAucaGGAGGCcgCAGGU-GUgCGCc -3' miRNA: 3'- uCUCGGCU---UCUCCGa-GUUCAgCA-GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home