miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 5' -54.2 NC_001847.1 + 111251 0.68 0.882635
Target:  5'- cGGGUCGGAGGcGGCgcCGGGUCGgaggcggCGCc -3'
miRNA:   3'- uCUCGGCUUCU-CCGa-GUUCAGCa------GCG- -5'
6518 5' -54.2 NC_001847.1 + 33546 0.7 0.772933
Target:  5'- cGGGcGCCGAAGAGGCggcAGaCGcCGCg -3'
miRNA:   3'- -UCU-CGGCUUCUCCGaguUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 113487 0.7 0.79173
Target:  5'- --cGCCGggG-GGCUCGcccuccGGUCG-CGCc -3'
miRNA:   3'- ucuCGGCuuCuCCGAGU------UCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 30525 0.69 0.818784
Target:  5'- cAGuGCCGgcGAGcGCgacgucgcCGAGcUCGUCGCg -3'
miRNA:   3'- -UCuCGGCuuCUC-CGa-------GUUC-AGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 24841 0.69 0.844257
Target:  5'- aAGAGCaGGuccggcacccAGAGGCagcugaaCAGGUUGUCGCa -3'
miRNA:   3'- -UCUCGgCU----------UCUCCGa------GUUCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 115760 0.69 0.844257
Target:  5'- cGGAGCCGAcggGGAgccGGCUCGgccAGagCGuUCGCg -3'
miRNA:   3'- -UCUCGGCU---UCU---CCGAGU---UCa-GC-AGCG- -5'
6518 5' -54.2 NC_001847.1 + 3585 0.68 0.860254
Target:  5'- cGGGGCUGAGGAaG-UCGGcGUCGUUGCg -3'
miRNA:   3'- -UCUCGGCUUCUcCgAGUU-CAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 124519 0.68 0.880488
Target:  5'- aGGAGCCGGAGgaccagcgccagcaGGGCgCGGGcCGgCGCc -3'
miRNA:   3'- -UCUCGGCUUC--------------UCCGaGUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 4599 0.68 0.882635
Target:  5'- -cGGCgaCGAAGGcGGC-CAcGUCGUCGCa -3'
miRNA:   3'- ucUCG--GCUUCU-CCGaGUuCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 20491 0.7 0.772933
Target:  5'- -uGGCgagGAAGAcGGCUCGcgcGUCGUCGCg -3'
miRNA:   3'- ucUCGg--CUUCU-CCGAGUu--CAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 101073 0.7 0.767189
Target:  5'- cGGGGCCGccgcGGGGGC-CGGGUCGgcggggcgggcgggCGCg -3'
miRNA:   3'- -UCUCGGCu---UCUCCGaGUUCAGCa-------------GCG- -5'
6518 5' -54.2 NC_001847.1 + 73532 0.7 0.763335
Target:  5'- uGAGCCGGcugauugcGGAGGUgggcgCGGGcgUGUCGCg -3'
miRNA:   3'- uCUCGGCU--------UCUCCGa----GUUCa-GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 38579 0.78 0.371325
Target:  5'- cGGAGCCGcGGAGGCUCcuggcguuGAGcgcgcgCGUCGCc -3'
miRNA:   3'- -UCUCGGCuUCUCCGAG--------UUCa-----GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 59399 0.75 0.528212
Target:  5'- cGGAGCCGGcGGAGGCgCGgcGGUCaUCGCu -3'
miRNA:   3'- -UCUCGGCU-UCUCCGaGU--UCAGcAGCG- -5'
6518 5' -54.2 NC_001847.1 + 119552 0.74 0.579166
Target:  5'- aGGAGUCGAAG-GGCUaCGAGcCGcCGCc -3'
miRNA:   3'- -UCUCGGCUUCuCCGA-GUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 101157 0.73 0.589502
Target:  5'- uGGGGCCGggGccgGGGCcgGGGUCGgggCGCg -3'
miRNA:   3'- -UCUCGGCuuC---UCCGagUUCAGCa--GCG- -5'
6518 5' -54.2 NC_001847.1 + 125269 0.73 0.610261
Target:  5'- cGAGCgGcAGAGGCggCAGGagcCGUCGCa -3'
miRNA:   3'- uCUCGgCuUCUCCGa-GUUCa--GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 47997 0.73 0.631089
Target:  5'- --cGCCGggGAGGa---AGUUGUCGCa -3'
miRNA:   3'- ucuCGGCuuCUCCgaguUCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 75649 0.72 0.651919
Target:  5'- cGGAGCCG--GAGGCgCGGG-CGUUGCu -3'
miRNA:   3'- -UCUCGGCuuCUCCGaGUUCaGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 66265 0.71 0.723832
Target:  5'- uGGGCCGggGAGGCcUCu--UCGgcccggCGCa -3'
miRNA:   3'- uCUCGGCuuCUCCG-AGuucAGCa-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.