miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 5' -54.2 NC_001847.1 + 977 0.66 0.926634
Target:  5'- cGGGCCGgcGGGGCUUc---CGcCGCg -3'
miRNA:   3'- uCUCGGCuuCUCCGAGuucaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 2357 0.67 0.915281
Target:  5'- cGGGCCGcauGAGGUcC-AGUCG-CGCg -3'
miRNA:   3'- uCUCGGCuu-CUCCGaGuUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 2789 1.12 0.002527
Target:  5'- cAGAGCCGAAGAGGCUCAAGUCGUCGCu -3'
miRNA:   3'- -UCUCGGCUUCUCCGAGUUCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 3585 0.68 0.860254
Target:  5'- cGGGGCUGAGGAaG-UCGGcGUCGUUGCg -3'
miRNA:   3'- -UCUCGGCUUCUcCgAGUU-CAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 4599 0.68 0.882635
Target:  5'- -cGGCgaCGAAGGcGGC-CAcGUCGUCGCa -3'
miRNA:   3'- ucUCG--GCUUCU-CCGaGUuCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 4710 0.67 0.902945
Target:  5'- cGGGCCGAGGuccgcGGaCUCGAuGagGUCGUa -3'
miRNA:   3'- uCUCGGCUUCu----CC-GAGUU-CagCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 8156 0.67 0.902945
Target:  5'- gAGGGCUaguuggGAAG-GGCUCGcGGUCGUUGa -3'
miRNA:   3'- -UCUCGG------CUUCuCCGAGU-UCAGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 8438 0.68 0.882635
Target:  5'- cGGGUCGGAGGcGGCgcCGGGUCGgaggcggCGCc -3'
miRNA:   3'- uCUCGGCUUCU-CCGa-GUUCAGCa------GCG- -5'
6518 5' -54.2 NC_001847.1 + 10674 0.7 0.79173
Target:  5'- --cGCCGggG-GGCUCGcccuccGGUCG-CGCc -3'
miRNA:   3'- ucuCGGCuuCuCCGAGU------UCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 11851 0.66 0.926634
Target:  5'- -uAGCgGAGGAuGGaCUUGAGUCG-CGCu -3'
miRNA:   3'- ucUCGgCUUCU-CC-GAGUUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 12181 0.72 0.662314
Target:  5'- cGGGcCCGAAGGGGUUgAGGaUGUCGUa -3'
miRNA:   3'- uCUC-GGCUUCUCCGAgUUCaGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 12924 0.72 0.672684
Target:  5'- --cGCCGcGGGGGCgcgCGuGUCGUCGUg -3'
miRNA:   3'- ucuCGGCuUCUCCGa--GUuCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 16964 0.66 0.950695
Target:  5'- gAGGGCCGGgcggcagauugAGGGGCaccgUCAGGaCGUCcuugGCa -3'
miRNA:   3'- -UCUCGGCU-----------UCUCCG----AGUUCaGCAG----CG- -5'
6518 5' -54.2 NC_001847.1 + 19250 0.66 0.941806
Target:  5'- cGAGCCGGccaAGcGGCgCGAGcCGgcggCGCa -3'
miRNA:   3'- uCUCGGCU---UCuCCGaGUUCaGCa---GCG- -5'
6518 5' -54.2 NC_001847.1 + 20491 0.7 0.772933
Target:  5'- -uGGCgagGAAGAcGGCUCGcgcGUCGUCGCg -3'
miRNA:   3'- ucUCGg--CUUCU-CCGAGUu--CAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 21706 0.68 0.880488
Target:  5'- aGGAGCCGGAGgaccagcgccagcaGGGCgCGGGcCGgCGCc -3'
miRNA:   3'- -UCUCGGCUUC--------------UCCGaGUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 21937 0.67 0.915281
Target:  5'- cGAGCCGGAGuccGaGCUC--GUCGUCcggGCg -3'
miRNA:   3'- uCUCGGCUUCu--C-CGAGuuCAGCAG---CG- -5'
6518 5' -54.2 NC_001847.1 + 22456 0.73 0.610261
Target:  5'- cGAGCgGcAGAGGCggCAGGagcCGUCGCa -3'
miRNA:   3'- uCUCGgCuUCUCCGa-GUUCa--GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 23416 0.66 0.926634
Target:  5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3'
miRNA:   3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 24841 0.69 0.844257
Target:  5'- aAGAGCaGGuccggcacccAGAGGCagcugaaCAGGUUGUCGCa -3'
miRNA:   3'- -UCUCGgCU----------UCUCCGa------GUUCAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.