miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 5' -54.2 NC_001847.1 + 2789 1.12 0.002527
Target:  5'- cAGAGCCGAAGAGGCUCAAGUCGUCGCu -3'
miRNA:   3'- -UCUCGGCUUCUCCGAGUUCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 79544 0.78 0.339279
Target:  5'- cGGGGCCGggGGGGCUgGGG-C-UCGCg -3'
miRNA:   3'- -UCUCGGCuuCUCCGAgUUCaGcAGCG- -5'
6518 5' -54.2 NC_001847.1 + 38579 0.78 0.371325
Target:  5'- cGGAGCCGcGGAGGCUCcuggcguuGAGcgcgcgCGUCGCc -3'
miRNA:   3'- -UCUCGGCuUCUCCGAG--------UUCa-----GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 50116 0.75 0.488679
Target:  5'- gGGGGCCGGgcuGGGGCUgucgcuggcaCAaacGGUCGUCGCc -3'
miRNA:   3'- -UCUCGGCUu--CUCCGA----------GU---UCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 59399 0.75 0.528212
Target:  5'- cGGAGCCGGcGGAGGCgCGgcGGUCaUCGCu -3'
miRNA:   3'- -UCUCGGCU-UCUCCGaGU--UCAGcAGCG- -5'
6518 5' -54.2 NC_001847.1 + 119552 0.74 0.579166
Target:  5'- aGGAGUCGAAG-GGCUaCGAGcCGcCGCc -3'
miRNA:   3'- -UCUCGGCUUCuCCGA-GUUCaGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 101157 0.73 0.589502
Target:  5'- uGGGGCCGggGccgGGGCcgGGGUCGgggCGCg -3'
miRNA:   3'- -UCUCGGCuuC---UCCGagUUCAGCa--GCG- -5'
6518 5' -54.2 NC_001847.1 + 125269 0.73 0.610261
Target:  5'- cGAGCgGcAGAGGCggCAGGagcCGUCGCa -3'
miRNA:   3'- uCUCGgCuUCUCCGa-GUUCa--GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 22456 0.73 0.610261
Target:  5'- cGAGCgGcAGAGGCggCAGGagcCGUCGCa -3'
miRNA:   3'- uCUCGgCuUCUCCGa-GUUCa--GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 47997 0.73 0.631089
Target:  5'- --cGCCGggGAGGa---AGUUGUCGCa -3'
miRNA:   3'- ucuCGGCuuCUCCgaguUCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 33530 0.73 0.641508
Target:  5'- cGGAGCCGGagacggacgcGGAGGUU-GAGUCGagGCg -3'
miRNA:   3'- -UCUCGGCU----------UCUCCGAgUUCAGCagCG- -5'
6518 5' -54.2 NC_001847.1 + 75649 0.72 0.651919
Target:  5'- cGGAGCCG--GAGGCgCGGG-CGUUGCu -3'
miRNA:   3'- -UCUCGGCuuCUCCGaGUUCaGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 12181 0.72 0.662314
Target:  5'- cGGGcCCGAAGGGGUUgAGGaUGUCGUa -3'
miRNA:   3'- uCUC-GGCUUCUCCGAgUUCaGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 12924 0.72 0.672684
Target:  5'- --cGCCGcGGGGGCgcgCGuGUCGUCGUg -3'
miRNA:   3'- ucuCGGCuUCUCCGa--GUuCAGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 46192 0.72 0.672684
Target:  5'- cGGGCgCGGAGAGGUcggCGuGUCcGUCGCg -3'
miRNA:   3'- uCUCG-GCUUCUCCGa--GUuCAG-CAGCG- -5'
6518 5' -54.2 NC_001847.1 + 66265 0.71 0.723832
Target:  5'- uGGGCCGggGAGGCcUCu--UCGgcccggCGCa -3'
miRNA:   3'- uCUCGGCuuCUCCG-AGuucAGCa-----GCG- -5'
6518 5' -54.2 NC_001847.1 + 38434 0.71 0.723832
Target:  5'- gGGAGCCcGAGGGGCgggCAucgcaGUCGCg -3'
miRNA:   3'- -UCUCGGcUUCUCCGa--GUucag-CAGCG- -5'
6518 5' -54.2 NC_001847.1 + 103647 0.71 0.733854
Target:  5'- cGGGUCGAAGAGGUagAccgCGUCGCc -3'
miRNA:   3'- uCUCGGCUUCUCCGagUucaGCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 96205 0.7 0.763335
Target:  5'- cGGGGCCGGAGucgGGGCcgGAGUCGggGCc -3'
miRNA:   3'- -UCUCGGCUUC---UCCGagUUCAGCagCG- -5'
6518 5' -54.2 NC_001847.1 + 73532 0.7 0.763335
Target:  5'- uGAGCCGGcugauugcGGAGGUgggcgCGGGcgUGUCGCg -3'
miRNA:   3'- uCUCGGCU--------UCUCCGa----GUUCa-GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.