miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 33344 0.66 0.690652
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 33256 0.73 0.331692
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 33229 0.67 0.660463
Target:  5'- uGAGCAACcgcaaguugGACAGCaGCCuguGGCUcaGCa -3'
miRNA:   3'- uCUCGUUG---------UUGUCG-CGGuu-CCGA--UGg -5'
652 5' -52.6 AC_000017.1 + 29282 0.72 0.358119
Target:  5'- aAGaAGCGGCGGCAGCauGCUAAGGCa--- -3'
miRNA:   3'- -UC-UCGUUGUUGUCG--CGGUUCCGaugg -5'
652 5' -52.6 AC_000017.1 + 27990 0.67 0.659297
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5'
652 5' -52.6 AC_000017.1 + 27975 0.66 0.729444
Target:  5'- -uGGCGGCGGCAGUGgUCAAGGUg--- -3'
miRNA:   3'- ucUCGUUGUUGUCGC-GGUUCCGaugg -5'
652 5' -52.6 AC_000017.1 + 26765 0.79 0.131592
Target:  5'- cGGcAGCAACAGCAGCgGCCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCG-CGGU-----------UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 26572 1.13 0.00046
Target:  5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3'
miRNA:   3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 26531 0.71 0.405342
Target:  5'- cGGGCAGugcCGGCGGCGCCugaggagcgGAGGUUguaGCCa -3'
miRNA:   3'- uCUCGUU---GUUGUCGCGG---------UUCCGA---UGG- -5'
652 5' -52.6 AC_000017.1 + 25387 0.69 0.544293
Target:  5'- uGGGCGugugGCAGCAGUGCCuggagGAGcGCaACCu -3'
miRNA:   3'- uCUCGU----UGUUGUCGCGG-----UUC-CGaUGG- -5'
652 5' -52.6 AC_000017.1 + 24391 0.66 0.695264
Target:  5'- -aAGCAucuGCAGCGCCAGuGcGCUAUUa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUU-C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 23955 0.66 0.683715
Target:  5'- -cGGCGGCGACGGCGaCGGGGacgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUUCCga-UGg -5'
652 5' -52.6 AC_000017.1 + 23403 0.67 0.67211
Target:  5'- -aGGUcuuACAuACGGcCGCCAGGGCUuCCa -3'
miRNA:   3'- ucUCGu--UGU-UGUC-GCGGUUCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 22192 0.67 0.67211
Target:  5'- uGGAGaaacauGCAGCAGaauagGCCAcAGGCgGCCg -3'
miRNA:   3'- -UCUCgu----UGUUGUCg----CGGU-UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 21734 0.69 0.555721
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 20884 0.68 0.590379
Target:  5'- --cGCAACuggGCGGCuuuCCGAGGCUggGCCu -3'
miRNA:   3'- ucuCGUUGu--UGUCGc--GGUUCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 19248 0.69 0.510508
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaagugggGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5'
652 5' -52.6 AC_000017.1 + 17676 0.66 0.729444
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
652 5' -52.6 AC_000017.1 + 17584 0.68 0.602025
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 17393 0.67 0.648786
Target:  5'- cGAGgAAguACGGCGCCGccAGcgcGCUACUg -3'
miRNA:   3'- uCUCgUUguUGUCGCGGU--UC---CGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.