miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 13062 0.73 0.314886
Target:  5'- uAGcAGCAGCAACAGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCGgU---UCCGa---UGg -5'
652 5' -52.6 AC_000017.1 + 5471 0.67 0.67211
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 33344 0.66 0.690652
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 6553 0.66 0.733934
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 17032 0.71 0.425299
Target:  5'- cGGGCAGCAccugcuGCAGUGUCAcGGGCUuuagGCUa -3'
miRNA:   3'- uCUCGUUGU------UGUCGCGGU-UCCGA----UGG- -5'
652 5' -52.6 AC_000017.1 + 3857 0.71 0.425299
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
652 5' -52.6 AC_000017.1 + 11812 0.69 0.510508
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
652 5' -52.6 AC_000017.1 + 17584 0.68 0.602025
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 14085 0.68 0.613699
Target:  5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3'
miRNA:   3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 22192 0.67 0.67211
Target:  5'- uGGAGaaacauGCAGCAGaauagGCCAcAGGCgGCCg -3'
miRNA:   3'- -UCUCgu----UGUUGUCg----CGGU-UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 11730 0.67 0.648786
Target:  5'- aAGA--AACAACuGCGCCAugagcGGCUugCu -3'
miRNA:   3'- -UCUcgUUGUUGuCGCGGUu----CCGAugG- -5'
652 5' -52.6 AC_000017.1 + 1063 0.68 0.602025
Target:  5'- aAGAcCuGCAACcGUGCCcGGGCUGCUc -3'
miRNA:   3'- -UCUcGuUGUUGuCGCGGuUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 29282 0.72 0.358119
Target:  5'- aAGaAGCGGCGGCAGCauGCUAAGGCa--- -3'
miRNA:   3'- -UC-UCGUUGUUGUCG--CGGUUCCGaugg -5'
652 5' -52.6 AC_000017.1 + 33229 0.67 0.660463
Target:  5'- uGAGCAACcgcaaguugGACAGCaGCCuguGGCUcaGCa -3'
miRNA:   3'- uCUCGUUG---------UUGUCG-CGGuu-CCGA--UGg -5'
652 5' -52.6 AC_000017.1 + 5552 0.72 0.385986
Target:  5'- aAGGGCAaGCuGC-GCGCCAAGGgccaUGCCg -3'
miRNA:   3'- -UCUCGU-UGuUGuCGCGGUUCCg---AUGG- -5'
652 5' -52.6 AC_000017.1 + 17330 0.68 0.602025
Target:  5'- --cGCGGCAucugcCAcCGCCGAGGCgACCg -3'
miRNA:   3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 15851 0.67 0.660463
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
652 5' -52.6 AC_000017.1 + 10845 0.66 0.683715
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 26531 0.71 0.405342
Target:  5'- cGGGCAGugcCGGCGGCGCCugaggagcgGAGGUUguaGCCa -3'
miRNA:   3'- uCUCGUU---GUUGUCGCGG---------UUCCGA---UGG- -5'
652 5' -52.6 AC_000017.1 + 19248 0.69 0.510508
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaagugggGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.