miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 133002 0.66 0.835006
Target:  5'- cUGGcgcCCGGCGCuCGCCUuCGAccCCGAGg -3'
miRNA:   3'- -ACCu--GGCUGCGuGCGGAuGUU--GGCUU- -5'
6527 3' -56.5 NC_001847.1 + 69668 0.66 0.845705
Target:  5'- aUGGACCGccagagcgagccuccGCGCGCGCCcgccUACAcgggcggGCUGGu -3'
miRNA:   3'- -ACCUGGC---------------UGCGUGCGG----AUGU-------UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 31841 0.66 0.851329
Target:  5'- aGGACCcuacguuCGCGCGCCcggGCucGCCGGc -3'
miRNA:   3'- aCCUGGcu-----GCGUGCGGa--UGu-UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 133928 0.66 0.835006
Target:  5'- cGGG-CGGCGCGCGCUggagcugGCGcCCGAc -3'
miRNA:   3'- aCCUgGCUGCGUGCGGa------UGUuGGCUu -5'
6527 3' -56.5 NC_001847.1 + 103182 0.66 0.843265
Target:  5'- gGGGCCcgcccCGCGCGCC-GCGcGCCGGAc -3'
miRNA:   3'- aCCUGGcu---GCGUGCGGaUGU-UGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 34268 0.66 0.843265
Target:  5'- -aGACCGGCGCgcggcggcuggGCGCCgcgcucGCGGCCGu- -3'
miRNA:   3'- acCUGGCUGCG-----------UGCGGa-----UGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 10056 0.66 0.874278
Target:  5'- -cGGCCGAcaCGCGCGCgCUGC-GCCGc- -3'
miRNA:   3'- acCUGGCU--GCGUGCG-GAUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 63439 0.66 0.843265
Target:  5'- cGGGCCGGCGCAcCGCgca-GACgCGGAc -3'
miRNA:   3'- aCCUGGCUGCGU-GCGgaugUUG-GCUU- -5'
6527 3' -56.5 NC_001847.1 + 49542 0.66 0.842448
Target:  5'- uUGGcuuuagcgccuuuGCCGGCGCgcccgucgacgGCGCCguugagacgACGGCCGAGg -3'
miRNA:   3'- -ACC-------------UGGCUGCG-----------UGCGGa--------UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 81398 0.66 0.835006
Target:  5'- cGGGCCGccggauccGCGCuACGCC-GCGcGCCGAu -3'
miRNA:   3'- aCCUGGC--------UGCG-UGCGGaUGU-UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 64860 0.66 0.835006
Target:  5'- aGGACUgguacuuucgcaGGCGCGCGCCgagaGCAacGCCGc- -3'
miRNA:   3'- aCCUGG------------CUGCGUGCGGa---UGU--UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 34509 0.66 0.843265
Target:  5'- cGaGGCCGACGCggacgGCGCCgGCGaugcgccgcccGCCGGg -3'
miRNA:   3'- aC-CUGGCUGCG-----UGCGGaUGU-----------UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 106405 0.66 0.843265
Target:  5'- cGGGCCcGCGagcuuCGCGCuCUGCAGCCa-- -3'
miRNA:   3'- aCCUGGcUGC-----GUGCG-GAUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 14913 0.66 0.843265
Target:  5'- aGGAaauuUUGGCGUACGCCgcgACGGCCu-- -3'
miRNA:   3'- aCCU----GGCUGCGUGCGGa--UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 76856 0.66 0.835006
Target:  5'- -cGGCCGcCGCcguCGCC-GCGGCCGAGc -3'
miRNA:   3'- acCUGGCuGCGu--GCGGaUGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 113373 0.66 0.843265
Target:  5'- -cGGCCGGCGCcgggcccgGCGCCgGCGGCCc-- -3'
miRNA:   3'- acCUGGCUGCG--------UGCGGaUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 133242 0.66 0.843265
Target:  5'- cGGGCUcuCGCACGCgCUcgcggcgcuggGCAACCGGc -3'
miRNA:   3'- aCCUGGcuGCGUGCG-GA-----------UGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 36767 0.66 0.851329
Target:  5'- cUGGAgaUCGA-GCGCGCCcGCGACgCGGAc -3'
miRNA:   3'- -ACCU--GGCUgCGUGCGGaUGUUG-GCUU- -5'
6527 3' -56.5 NC_001847.1 + 97845 0.66 0.832491
Target:  5'- cGGGCUG-CGCGCGCCUuauACAaugcuccagucgacGCCGc- -3'
miRNA:   3'- aCCUGGCuGCGUGCGGA---UGU--------------UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 61643 0.66 0.835006
Target:  5'- cUGGACUGcaGCGC-CGCCaccGCGGCCGc- -3'
miRNA:   3'- -ACCUGGC--UGCGuGCGGa--UGUUGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.