miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 9859 1.06 0.003511
Target:  5'- gUGGACCGACGCACGCCUACAACCGAAc -3'
miRNA:   3'- -ACCUGGCUGCGUGCGGAUGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 48156 0.86 0.082967
Target:  5'- cGGGCCGGCGCGCGCCggccCGGCCGGc -3'
miRNA:   3'- aCCUGGCUGCGUGCGGau--GUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 96534 0.79 0.217294
Target:  5'- cGGACCG-CGCGCGCCggcugUGCAGCCGc- -3'
miRNA:   3'- aCCUGGCuGCGUGCGG-----AUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 35649 0.79 0.22274
Target:  5'- cUGGACCG-CGC-CGCCUcgGCGGCCGAc -3'
miRNA:   3'- -ACCUGGCuGCGuGCGGA--UGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 71981 0.79 0.22274
Target:  5'- cGcGACCGACGUgcGCGCCUGCGcGCCGGGa -3'
miRNA:   3'- aC-CUGGCUGCG--UGCGGAUGU-UGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 7321 0.79 0.227741
Target:  5'- cGGACCGACGCuauuuCGCCUGCAagaagcggugguaGCCGu- -3'
miRNA:   3'- aCCUGGCUGCGu----GCGGAUGU-------------UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 86990 0.78 0.251733
Target:  5'- cGGGCCGGCGCGCGCCgGC--CCGGc -3'
miRNA:   3'- aCCUGGCUGCGUGCGGaUGuuGGCUu -5'
6527 3' -56.5 NC_001847.1 + 53716 0.77 0.27058
Target:  5'- gUGGGCCGGCggcuggcgcuGUGCGCCUGCGACCa-- -3'
miRNA:   3'- -ACCUGGCUG----------CGUGCGGAUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 104239 0.77 0.283765
Target:  5'- --cGCCGGCGCGCGCCUcaccgggcuGCGGCCGGg -3'
miRNA:   3'- accUGGCUGCGUGCGGA---------UGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 29443 0.76 0.304487
Target:  5'- cUGGGgCGugGCGcCGCCcGCGGCCGAAg -3'
miRNA:   3'- -ACCUgGCugCGU-GCGGaUGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 43402 0.76 0.318935
Target:  5'- -cGGCCGACGCGCGCagggcgCUGCAGCUGGg -3'
miRNA:   3'- acCUGGCUGCGUGCG------GAUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 37824 0.76 0.341562
Target:  5'- cGGGCgCGACGCcgacGCGCCUGCcGCCGu- -3'
miRNA:   3'- aCCUG-GCUGCG----UGCGGAUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 116799 0.75 0.349358
Target:  5'- cGGcugccGCCGACGguaaCGCGCCUGCAGCCGc- -3'
miRNA:   3'- aCC-----UGGCUGC----GUGCGGAUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 131677 0.75 0.35728
Target:  5'- cGGcgcGCCGGCGCGCGCUUGCugUCGAc -3'
miRNA:   3'- aCC---UGGCUGCGUGCGGAUGuuGGCUu -5'
6527 3' -56.5 NC_001847.1 + 89835 0.75 0.35728
Target:  5'- cGGAa--ACGCGCGCCUGCGACCGc- -3'
miRNA:   3'- aCCUggcUGCGUGCGGAUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 91103 0.75 0.35728
Target:  5'- cGGccCCGACGCGCGCCUcgcuGCAGCCc-- -3'
miRNA:   3'- aCCu-GGCUGCGUGCGGA----UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 130861 0.75 0.372675
Target:  5'- aGGcGCCGGCGCGCGCCUcguggccGCcaaAGCCGAc -3'
miRNA:   3'- aCC-UGGCUGCGUGCGGA-------UG---UUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 65509 0.75 0.381792
Target:  5'- gUGGGgCGGCGCGCGCagUGCGGCCGc- -3'
miRNA:   3'- -ACCUgGCUGCGUGCGg-AUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 75904 0.75 0.390208
Target:  5'- cUGG-CCGGCGCcauCGCCgACGGCCGAc -3'
miRNA:   3'- -ACCuGGCUGCGu--GCGGaUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 35925 0.74 0.416172
Target:  5'- aUGGACCGgcggucGCGCGCGCUUGCGcCUGGg -3'
miRNA:   3'- -ACCUGGC------UGCGUGCGGAUGUuGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.