miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 68234 0.72 0.539514
Target:  5'- gGGGCCGcaaGCACGCUUGCAucaGCgCGAAg -3'
miRNA:   3'- aCCUGGCug-CGUGCGGAUGU---UG-GCUU- -5'
6527 3' -56.5 NC_001847.1 + 32005 0.73 0.461699
Target:  5'- aGGACCuuCGCGCGCCgGCGGCCc-- -3'
miRNA:   3'- aCCUGGcuGCGUGCGGaUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 133889 0.73 0.461699
Target:  5'- gGGGCuCGGCGCGC-CgCUGCGGCCGGu -3'
miRNA:   3'- aCCUG-GCUGCGUGcG-GAUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 59874 0.73 0.471118
Target:  5'- aGGGCCGGCGCGCGgCCUccGCGuuGgCGAGg -3'
miRNA:   3'- aCCUGGCUGCGUGC-GGA--UGU--UgGCUU- -5'
6527 3' -56.5 NC_001847.1 + 3526 0.73 0.471118
Target:  5'- cGGGCCGugGC-CGaCUACGGCCGc- -3'
miRNA:   3'- aCCUGGCugCGuGCgGAUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 28421 0.73 0.480633
Target:  5'- gGGGCUuagcgcccuGGCGCACGCCgcCAACUGGAa -3'
miRNA:   3'- aCCUGG---------CUGCGUGCGGauGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 3979 0.72 0.519578
Target:  5'- gUGGGCCGugaGCACGCCagcGCGGCCa-- -3'
miRNA:   3'- -ACCUGGCug-CGUGCGGa--UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 78655 0.72 0.529511
Target:  5'- cGG-UCG-CGCGCGCCUGCGucGCCGGc -3'
miRNA:   3'- aCCuGGCuGCGUGCGGAUGU--UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 4230 0.72 0.539514
Target:  5'- cGGuGCCGGCGCGCGCCgGCAcgaGCUGc- -3'
miRNA:   3'- aCC-UGGCUGCGUGCGGaUGU---UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 124443 0.73 0.461699
Target:  5'- uUGG-CCGGCGCGgGCCgcgcccgggcGCGACCGGAg -3'
miRNA:   3'- -ACCuGGCUGCGUgCGGa---------UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 66284 0.73 0.45238
Target:  5'- cGGcCCGGCGCACGCCgccgcgcucGCGcCCGAGc -3'
miRNA:   3'- aCCuGGCUGCGUGCGGa--------UGUuGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 44248 0.74 0.434057
Target:  5'- gGGGCUGA-GCGCGCCgGCGACUGGg -3'
miRNA:   3'- aCCUGGCUgCGUGCGGaUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 48156 0.86 0.082967
Target:  5'- cGGGCCGGCGCGCGCCggccCGGCCGGc -3'
miRNA:   3'- aCCUGGCUGCGUGCGGau--GUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 96534 0.79 0.217294
Target:  5'- cGGACCG-CGCGCGCCggcugUGCAGCCGc- -3'
miRNA:   3'- aCCUGGCuGCGUGCGG-----AUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 35649 0.79 0.22274
Target:  5'- cUGGACCG-CGC-CGCCUcgGCGGCCGAc -3'
miRNA:   3'- -ACCUGGCuGCGuGCGGA--UGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 7321 0.79 0.227741
Target:  5'- cGGACCGACGCuauuuCGCCUGCAagaagcggugguaGCCGu- -3'
miRNA:   3'- aCCUGGCUGCGu----GCGGAUGU-------------UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 53716 0.77 0.27058
Target:  5'- gUGGGCCGGCggcuggcgcuGUGCGCCUGCGACCa-- -3'
miRNA:   3'- -ACCUGGCUG----------CGUGCGGAUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 29443 0.76 0.304487
Target:  5'- cUGGGgCGugGCGcCGCCcGCGGCCGAAg -3'
miRNA:   3'- -ACCUgGCugCGU-GCGGaUGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 37824 0.76 0.341562
Target:  5'- cGGGCgCGACGCcgacGCGCCUGCcGCCGu- -3'
miRNA:   3'- aCCUG-GCUGCG----UGCGGAUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 91103 0.75 0.35728
Target:  5'- cGGccCCGACGCGCGCCUcgcuGCAGCCc-- -3'
miRNA:   3'- aCCu-GGCUGCGUGCGGA----UGUUGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.