miRNA display CGI


Results 1 - 20 of 345 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 369 0.66 0.843265
Target:  5'- gGGGCCcgcccCGCGCGCC-GCGcGCCGGAc -3'
miRNA:   3'- aCCUGGcu---GCGUGCGGaUGU-UGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 486 0.68 0.743442
Target:  5'- aUGGguGCCcGCGCcuccGCGCCUGCuGCCGGc -3'
miRNA:   3'- -ACC--UGGcUGCG----UGCGGAUGuUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 946 0.66 0.874278
Target:  5'- cGGcCCG-CGCGCGCCgcuccACGcugcGCCGGg -3'
miRNA:   3'- aCCuGGCuGCGUGCGGa----UGU----UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 1571 0.66 0.866841
Target:  5'- aGGccaGCaCGGCGCGCGCCaGCGcGCCGc- -3'
miRNA:   3'- aCC---UG-GCUGCGUGCGGaUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 2561 0.68 0.743442
Target:  5'- cGGGCugucuuCGGCGCggGCGCCUGCGcgGCCGc- -3'
miRNA:   3'- aCCUG------GCUGCG--UGCGGAUGU--UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 2770 0.67 0.78178
Target:  5'- cGGcGCCGGCGCcccCGCCgGCGGCCu-- -3'
miRNA:   3'- aCC-UGGCUGCGu--GCGGaUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 2799 0.66 0.85919
Target:  5'- aGGGCCGcgaGCGCgGCCgcCAGCCGc- -3'
miRNA:   3'- aCCUGGCug-CGUG-CGGauGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 2843 0.7 0.64196
Target:  5'- cGGGCUGaacagcGCGCGCGCCaGCGcccagGCCGAc -3'
miRNA:   3'- aCCUGGC------UGCGUGCGGaUGU-----UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 3082 0.66 0.85919
Target:  5'- cGcGuCCGGCGCGCagGCC-GCGGCCGGc -3'
miRNA:   3'- aC-CuGGCUGCGUG--CGGaUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 3265 0.67 0.81793
Target:  5'- gGGcGCCGGCGC-CGC--GCGGCCGGc -3'
miRNA:   3'- aCC-UGGCUGCGuGCGgaUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 3526 0.73 0.471118
Target:  5'- cGGGCCGugGC-CGaCUACGGCCGc- -3'
miRNA:   3'- aCCUGGCugCGuGCgGAUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 3592 0.66 0.843265
Target:  5'- cGGGCCcGCGagcuuCGCGCuCUGCAGCCa-- -3'
miRNA:   3'- aCCUGGcUGC-----GUGCG-GAUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 3979 0.72 0.519578
Target:  5'- gUGGGCCGugaGCACGCCagcGCGGCCa-- -3'
miRNA:   3'- -ACCUGGCug-CGUGCGGa--UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 3987 0.67 0.78178
Target:  5'- gGGGCCgGGCGCGCGgCCccGCGgggcGCCGGg -3'
miRNA:   3'- aCCUGG-CUGCGUGC-GGa-UGU----UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 4017 0.67 0.826558
Target:  5'- nGGcCCGGCGCcCGCCUcucGCGggGCCGc- -3'
miRNA:   3'- aCCuGGCUGCGuGCGGA---UGU--UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 4230 0.72 0.539514
Target:  5'- cGGuGCCGGCGCGCGCCgGCAcgaGCUGc- -3'
miRNA:   3'- aCC-UGGCUGCGUGCGGaUGU---UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 4377 0.67 0.81793
Target:  5'- cGcGACCGcgagcGCGCGCGCC-GCGGCCc-- -3'
miRNA:   3'- aC-CUGGC-----UGCGUGCGGaUGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 4634 0.69 0.723639
Target:  5'- cGGcccGCCGGCGCucgcGCGCCU-CAGcCCGAc -3'
miRNA:   3'- aCC---UGGCUGCG----UGCGGAuGUU-GGCUu -5'
6527 3' -56.5 NC_001847.1 + 5081 0.69 0.682121
Target:  5'- aGGACggCGACGCGucgccguCGCCUagguugcuagcgGCGGCCGAAg -3'
miRNA:   3'- aCCUG--GCUGCGU-------GCGGA------------UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 7321 0.79 0.227741
Target:  5'- cGGACCGACGCuauuuCGCCUGCAagaagcggugguaGCCGu- -3'
miRNA:   3'- aCCUGGCUGCGu----GCGGAUGU-------------UGGCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.