miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 90184 0.66 0.561322
Target:  5'- uUGCGGGGCUGcugcggCGCGC-CGUcGCCcaGCc -3'
miRNA:   3'- -ACGCUCCGGCa-----GCGCGaGCAcCGG--CG- -5'
6527 5' -62.7 NC_001847.1 + 99666 0.66 0.561322
Target:  5'- cGCGccggaccccaaAGGCUGgcuuugcggCGCGCggcgCG-GGCCGCc -3'
miRNA:   3'- aCGC-----------UCCGGCa--------GCGCGa---GCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 20750 0.66 0.561322
Target:  5'- gGUGAGGCgGgccUCGCcUUCGUcGGCgCGCa -3'
miRNA:   3'- aCGCUCCGgC---AGCGcGAGCA-CCG-GCG- -5'
6527 5' -62.7 NC_001847.1 + 49739 0.66 0.580706
Target:  5'- gGCGAGGCgGU-GCGCgu---GCCGCu -3'
miRNA:   3'- aCGCUCCGgCAgCGCGagcacCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 57082 0.66 0.561322
Target:  5'- cGCGGcGGCCa--GCGCUgCGcUGGaCCGCc -3'
miRNA:   3'- aCGCU-CCGGcagCGCGA-GC-ACC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 47689 0.66 0.580706
Target:  5'- cGaCGAGGUCcUCgGCGUUgGcGGCCGCc -3'
miRNA:   3'- aC-GCUCCGGcAG-CGCGAgCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 54896 0.66 0.570994
Target:  5'- cUGCGGcacGCCGUCGacccgGCaaCGUGGcCCGCg -3'
miRNA:   3'- -ACGCUc--CGGCAGCg----CGa-GCACC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 82459 0.66 0.561322
Target:  5'- cGCGcacGGCCG-CGUGCggCGUG-CCGUg -3'
miRNA:   3'- aCGCu--CCGGCaGCGCGa-GCACcGGCG- -5'
6527 5' -62.7 NC_001847.1 + 23473 0.66 0.561322
Target:  5'- cGCcucGGCCaUCGCGCUCGgcgcGcGUCGCu -3'
miRNA:   3'- aCGcu-CCGGcAGCGCGAGCa---C-CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 59845 0.66 0.561322
Target:  5'- cGCGGGGCacCGgccaggCGCGgUCGccgagGGCCGg -3'
miRNA:   3'- aCGCUCCG--GCa-----GCGCgAGCa----CCGGCg -5'
6527 5' -62.7 NC_001847.1 + 56763 0.66 0.561322
Target:  5'- cUGCaGGaGCUGgCGCGCUCGaacGGCaCGCu -3'
miRNA:   3'- -ACGcUC-CGGCaGCGCGAGCa--CCG-GCG- -5'
6527 5' -62.7 NC_001847.1 + 50256 0.66 0.561322
Target:  5'- gGCGAaGCUGgaCGCGCUgggcgcguaCGUGGgCCGCc -3'
miRNA:   3'- aCGCUcCGGCa-GCGCGA---------GCACC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 20273 0.66 0.570994
Target:  5'- gGCGAGGUCGgCGcCGCgCGUcGGaaGCa -3'
miRNA:   3'- aCGCUCCGGCaGC-GCGaGCA-CCggCG- -5'
6527 5' -62.7 NC_001847.1 + 81364 0.66 0.568088
Target:  5'- cGCGGcGGCUGcggugcugccgcccUCGcCGcCUCG-GGCCGCc -3'
miRNA:   3'- aCGCU-CCGGC--------------AGC-GC-GAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 36838 0.66 0.561322
Target:  5'- cUG-GGGGCUGgcggacgUGCGCUCGgcggcGGCCGa -3'
miRNA:   3'- -ACgCUCCGGCa------GCGCGAGCa----CCGGCg -5'
6527 5' -62.7 NC_001847.1 + 19266 0.66 0.570994
Target:  5'- cGCGA-GCCGgcggCGCaGCgucugugCGgcgGGCCGCc -3'
miRNA:   3'- aCGCUcCGGCa---GCG-CGa------GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 44840 0.66 0.619833
Target:  5'- -aUGGGcGCgGUCGCGCUCcaaaaacgcacGUcGCCGCg -3'
miRNA:   3'- acGCUC-CGgCAGCGCGAG-----------CAcCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 44422 0.66 0.580706
Target:  5'- cGCGAgcGGCUGcguUCGCGCaCGgGGgCGCg -3'
miRNA:   3'- aCGCU--CCGGC---AGCGCGaGCaCCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 62474 0.66 0.580706
Target:  5'- aGCaGGGCCGggGuCGCcggCGggcGGCCGCg -3'
miRNA:   3'- aCGcUCCGGCagC-GCGa--GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 90335 0.66 0.570994
Target:  5'- -cUGGGGCgCGgugcCGCGCUCGgcgcuuucgGGCgGCg -3'
miRNA:   3'- acGCUCCG-GCa---GCGCGAGCa--------CCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.