miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 9893 1.1 0.00061
Target:  5'- uUGCGAGGCCGUCGCGCUCGUGGCCGCc -3'
miRNA:   3'- -ACGCUCCGGCAGCGCGAGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 33647 0.89 0.019945
Target:  5'- cGCGAGGCgCG-CGCGCgCGUGGCCGCg -3'
miRNA:   3'- aCGCUCCG-GCaGCGCGaGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 130850 0.83 0.054051
Target:  5'- cGCGAGuaccaaggcGCCGgcgCGCGcCUCGUGGCCGCc -3'
miRNA:   3'- aCGCUC---------CGGCa--GCGC-GAGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 15558 0.8 0.083767
Target:  5'- cGCGcGGCCGUCGgGC-CGcGGCCGCc -3'
miRNA:   3'- aCGCuCCGGCAGCgCGaGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 130626 0.8 0.083767
Target:  5'- cGCGAGGCaCGUCGUGCgcaCGuUGGCgGCg -3'
miRNA:   3'- aCGCUCCG-GCAGCGCGa--GC-ACCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 74401 0.79 0.090427
Target:  5'- cGCGcGGCCGcCGCGCgcgCGcgGGCCGCc -3'
miRNA:   3'- aCGCuCCGGCaGCGCGa--GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 123468 0.79 0.095143
Target:  5'- gGCGAcGGCCGcCGCggGCUCGgcuggGGCCGCc -3'
miRNA:   3'- aCGCU-CCGGCaGCG--CGAGCa----CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 63272 0.79 0.095143
Target:  5'- -aCG-GGCCG-CGCGCUCGcGGCCGCu -3'
miRNA:   3'- acGCuCCGGCaGCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 81244 0.79 0.095143
Target:  5'- gGCGGGGCCGUCGCGaggaCGgggGGcCCGCc -3'
miRNA:   3'- aCGCUCCGGCAGCGCga--GCa--CC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 104906 0.79 0.102656
Target:  5'- cGCGGGGCC--CGCGCggCGgcgGGCCGCg -3'
miRNA:   3'- aCGCUCCGGcaGCGCGa-GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2093 0.79 0.102656
Target:  5'- cGCGGGGCC--CGCGCggCGgcgGGCCGCg -3'
miRNA:   3'- aCGCUCCGGcaGCGCGa-GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 28605 0.78 0.105282
Target:  5'- cGCGAGGCgGcCGCGCgcuacgCGgcGGCCGCg -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa-----GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 131418 0.78 0.105282
Target:  5'- cGCGAGGCgGcCGCGCgcuacgCGgcGGCCGCg -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa-----GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 120405 0.78 0.113544
Target:  5'- cGCGAGGCCcggCGCGCguaUGUGGgCGCa -3'
miRNA:   3'- aCGCUCCGGca-GCGCGa--GCACCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 2508 0.78 0.11643
Target:  5'- cGCGAgGGCCGccUCGCGCUUugcugccgGGCCGCg -3'
miRNA:   3'- aCGCU-CCGGC--AGCGCGAGca------CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 130755 0.77 0.122409
Target:  5'- aGCGccuGGGCCGcggcgcgCGCGCUCGcGGUCGCg -3'
miRNA:   3'- aCGC---UCCGGCa------GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 34277 0.77 0.125504
Target:  5'- cGCGGcGGCUGggcgcCGCGCUCGcGGCCGUc -3'
miRNA:   3'- aCGCU-CCGGCa----GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 73239 0.77 0.125504
Target:  5'- gGCGGcGGCgCGggCGCGCUCGaGGCCGUg -3'
miRNA:   3'- aCGCU-CCG-GCa-GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 120929 0.77 0.128671
Target:  5'- gGCGGGGCgGgCGCGCgggCGUGGUgGCu -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa--GCACCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 111297 0.77 0.128671
Target:  5'- cGCGAGGCCaGcCG-GCUCGgGGCCGUg -3'
miRNA:   3'- aCGCUCCGG-CaGCgCGAGCaCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.