miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 33647 0.89 0.019945
Target:  5'- cGCGAGGCgCG-CGCGCgCGUGGCCGCg -3'
miRNA:   3'- aCGCUCCG-GCaGCGCGaGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 34767 0.75 0.172837
Target:  5'- gGCGcGGCUG-CGCGC-CGcGGCCGCg -3'
miRNA:   3'- aCGCuCCGGCaGCGCGaGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 54060 0.75 0.172837
Target:  5'- gGCGAGGCCGccgccaGCGC-CGUcGCCGCc -3'
miRNA:   3'- aCGCUCCGGCag----CGCGaGCAcCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 131158 0.76 0.152988
Target:  5'- cGCGGGGCCG-CGCGCcCG-GGCCcccgGCg -3'
miRNA:   3'- aCGCUCCGGCaGCGCGaGCaCCGG----CG- -5'
6527 5' -62.7 NC_001847.1 + 77542 0.76 0.152988
Target:  5'- cGCGAGGgCGUgGCGCacccUCGUgcgcuuuccgcGGCCGCg -3'
miRNA:   3'- aCGCUCCgGCAgCGCG----AGCA-----------CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 53019 0.76 0.145643
Target:  5'- aGCGGcGGCCGcugCGCGCUCG-GGCCu- -3'
miRNA:   3'- aCGCU-CCGGCa--GCGCGAGCaCCGGcg -5'
6527 5' -62.7 NC_001847.1 + 32991 0.76 0.145643
Target:  5'- uUGCGgcGGGCCG-CGcCGC-CGUGGUCGCg -3'
miRNA:   3'- -ACGC--UCCGGCaGC-GCGaGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 89925 0.77 0.142093
Target:  5'- cGCGAGGCC---GCGCUCGcGGCgGCg -3'
miRNA:   3'- aCGCUCCGGcagCGCGAGCaCCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 4170 0.77 0.138622
Target:  5'- aGCGggccuuguuuuGGGCCG-CGCGCcCGUGGgCCGCg -3'
miRNA:   3'- aCGC-----------UCCGGCaGCGCGaGCACC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 5667 0.77 0.135229
Target:  5'- aUGCGc-GCCGUCGCGCgcggCGgcGGCCGCc -3'
miRNA:   3'- -ACGCucCGGCAGCGCGa---GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 88823 0.77 0.131913
Target:  5'- cGCGGgcGGCCGUgcUGCGCUCGgcgcuacggcUGGCCGUa -3'
miRNA:   3'- aCGCU--CCGGCA--GCGCGAGC----------ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 34277 0.77 0.125504
Target:  5'- cGCGGcGGCUGggcgcCGCGCUCGcGGCCGUc -3'
miRNA:   3'- aCGCU-CCGGCa----GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 130755 0.77 0.122409
Target:  5'- aGCGccuGGGCCGcggcgcgCGCGCUCGcGGUCGCg -3'
miRNA:   3'- aCGC---UCCGGCa------GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2508 0.78 0.11643
Target:  5'- cGCGAgGGCCGccUCGCGCUUugcugccgGGCCGCg -3'
miRNA:   3'- aCGCU-CCGGC--AGCGCGAGca------CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 131418 0.78 0.105282
Target:  5'- cGCGAGGCgGcCGCGCgcuacgCGgcGGCCGCg -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa-----GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 104906 0.79 0.102656
Target:  5'- cGCGGGGCC--CGCGCggCGgcgGGCCGCg -3'
miRNA:   3'- aCGCUCCGGcaGCGCGa-GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 63272 0.79 0.095143
Target:  5'- -aCG-GGCCG-CGCGCUCGcGGCCGCu -3'
miRNA:   3'- acGCuCCGGCaGCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 74401 0.79 0.090427
Target:  5'- cGCGcGGCCGcCGCGCgcgCGcgGGCCGCc -3'
miRNA:   3'- aCGCuCCGGCaGCGCGa--GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 15558 0.8 0.083767
Target:  5'- cGCGcGGCCGUCGgGC-CGcGGCCGCc -3'
miRNA:   3'- aCGCuCCGGCAGCgCGaGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 9893 1.1 0.00061
Target:  5'- uUGCGAGGCCGUCGCGCUCGUGGCCGCc -3'
miRNA:   3'- -ACGCUCCGGCAGCGCGAGCACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.