miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 761 0.68 0.458976
Target:  5'- gGCGAGGCCGgCcCGC-CGccGGCgGCg -3'
miRNA:   3'- aCGCUCCGGCaGcGCGaGCa-CCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 893 0.71 0.309187
Target:  5'- cGcCGGGGCCGcCGCgGC-CGccGGCCGCc -3'
miRNA:   3'- aC-GCUCCGGCaGCG-CGaGCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 997 0.69 0.43278
Target:  5'- cGCGGcGGCgGcaCGCGCUCcaccaGGCCGCc -3'
miRNA:   3'- aCGCU-CCGgCa-GCGCGAGca---CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 1280 0.66 0.590452
Target:  5'- aGCGGuuGGCgG-CGCGgUgGcUGGCCGCc -3'
miRNA:   3'- aCGCU--CCGgCaGCGCgAgC-ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 1567 0.7 0.383119
Target:  5'- cGCGAGGCCagcacggCGCGCgccagCGc-GCCGCu -3'
miRNA:   3'- aCGCUCCGGca-----GCGCGa----GCacCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 1671 0.68 0.458976
Target:  5'- gGCcGGGCCGUCGCGCggccaguucUCGgGGUCcacgGCg -3'
miRNA:   3'- aCGcUCCGGCAGCGCG---------AGCaCCGG----CG- -5'
6527 5' -62.7 NC_001847.1 + 1914 0.7 0.39113
Target:  5'- gUGCGAGaGCCcGcCGCGgcgcggcggccaCUCG-GGCCGCc -3'
miRNA:   3'- -ACGCUC-CGG-CaGCGC------------GAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2093 0.79 0.102656
Target:  5'- cGCGGGGCC--CGCGCggCGgcgGGCCGCg -3'
miRNA:   3'- aCGCUCCGGcaGCGCGa-GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2147 0.69 0.43278
Target:  5'- gGCGAGcGCCGggCGCcaggGCUCGgggaagagcgggUGGuCCGCg -3'
miRNA:   3'- aCGCUC-CGGCa-GCG----CGAGC------------ACC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 2297 0.68 0.485993
Target:  5'- gGCGGGGCCGcCGgGCggcaugGGCCccaGCa -3'
miRNA:   3'- aCGCUCCGGCaGCgCGagca--CCGG---CG- -5'
6527 5' -62.7 NC_001847.1 + 2340 0.68 0.450149
Target:  5'- aGCGGcGGCuccCGcCGCGC-CGgcccGGCCGCg -3'
miRNA:   3'- aCGCU-CCG---GCaGCGCGaGCa---CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2385 0.71 0.337393
Target:  5'- cGCGAagacGGCgGUgaCGCGCUCGgccgUGGCuCGCu -3'
miRNA:   3'- aCGCU----CCGgCA--GCGCGAGC----ACCG-GCG- -5'
6527 5' -62.7 NC_001847.1 + 2508 0.78 0.11643
Target:  5'- cGCGAgGGCCGccUCGCGCUUugcugccgGGCCGCg -3'
miRNA:   3'- aCGCU-CCGGC--AGCGCGAGca------CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2559 0.69 0.424243
Target:  5'- gGCG-GGCUGUCuucggcgcggGCGCcugCGcGGCCGCc -3'
miRNA:   3'- aCGCuCCGGCAG----------CGCGa--GCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2634 0.69 0.441416
Target:  5'- gGCGGGaccGCCGUCGcCGCUUGcGG-CGCc -3'
miRNA:   3'- aCGCUC---CGGCAGC-GCGAGCaCCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 2798 0.7 0.375218
Target:  5'- --aGAGGCucaaguCGUCGCuCUCGcUGGCCGUg -3'
miRNA:   3'- acgCUCCG------GCAGCGcGAGC-ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2865 0.73 0.230039
Target:  5'- aGCGcccAGGCCGaCGCGCg---GGCCGCc -3'
miRNA:   3'- aCGC---UCCGGCaGCGCGagcaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2888 0.67 0.532597
Target:  5'- gGCcGGGUgCGUCGcCGUUCG-GGCCGg -3'
miRNA:   3'- aCGcUCCG-GCAGC-GCGAGCaCCGGCg -5'
6527 5' -62.7 NC_001847.1 + 2916 0.74 0.219501
Target:  5'- aGCGGGGCCacgGUcCGCGCcgccagCGcGGCCGCc -3'
miRNA:   3'- aCGCUCCGG---CA-GCGCGa-----GCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2984 0.71 0.302422
Target:  5'- cGcCGGGGCCGgcgcuggagccgcgCGCGCUCcaccgcgucgcgGGCCGCg -3'
miRNA:   3'- aC-GCUCCGGCa-------------GCGCGAGca----------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.