miRNA display CGI


Results 1 - 20 of 494 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 69094 0.66 0.816064
Target:  5'- gGCGCCGCgCGcggACGGgcgggccgcguucUCGGCGUacGUGGu -3'
miRNA:   3'- gUGCGGCGgGU---UGCU-------------AGUCGCG--CACC- -5'
6530 5' -57.9 NC_001847.1 + 21749 0.66 0.808308
Target:  5'- cUACGCUGCCgCGACGugcUGGCGuCGcUGGg -3'
miRNA:   3'- -GUGCGGCGG-GUUGCua-GUCGC-GC-ACC- -5'
6530 5' -57.9 NC_001847.1 + 120491 0.66 0.816917
Target:  5'- aCGCGCCccGCUCGcaGCGAgCGGCGCGcGa -3'
miRNA:   3'- -GUGCGG--CGGGU--UGCUaGUCGCGCaCc -5'
6530 5' -57.9 NC_001847.1 + 84308 0.66 0.816917
Target:  5'- aGCGCCcCCCGGCGcgggCAGCGCc--- -3'
miRNA:   3'- gUGCGGcGGGUUGCua--GUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 46907 0.66 0.816064
Target:  5'- cCGCGCCGCgccggccucggcuCCGGCGA--GGCGCuuuUGGg -3'
miRNA:   3'- -GUGCGGCG-------------GGUUGCUagUCGCGc--ACC- -5'
6530 5' -57.9 NC_001847.1 + 54960 0.66 0.816917
Target:  5'- aCGgGCCGCUCuuuGACGG-CAGCGCGc-- -3'
miRNA:   3'- -GUgCGGCGGG---UUGCUaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 125018 0.66 0.808308
Target:  5'- aGCGCCuCCCAGCacgcGUCcguGgGCGUGGc -3'
miRNA:   3'- gUGCGGcGGGUUGc---UAGu--CgCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 88814 0.66 0.808308
Target:  5'- gACGCgGCCC-GCGggCGGC-CGUGc -3'
miRNA:   3'- gUGCGgCGGGuUGCuaGUCGcGCACc -5'
6530 5' -57.9 NC_001847.1 + 52458 0.66 0.844924
Target:  5'- aGCGgCGCCCGacucaugaccacagcACGAgcgCGGCGCGc-- -3'
miRNA:   3'- gUGCgGCGGGU---------------UGCUa--GUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 29452 0.66 0.816917
Target:  5'- gGCGCCGCCCG-CGGccgaAGCGCc--- -3'
miRNA:   3'- gUGCGGCGGGUuGCUag--UCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 122122 0.66 0.808308
Target:  5'- gACGCUGCaggucgCGACGGcCGGCGCGcagGGc -3'
miRNA:   3'- gUGCGGCGg-----GUUGCUaGUCGCGCa--CC- -5'
6530 5' -57.9 NC_001847.1 + 40097 0.66 0.808308
Target:  5'- cCGCGCCgguGCCuCGguugguagguGCGG-CuGCGCGUGGg -3'
miRNA:   3'- -GUGCGG---CGG-GU----------UGCUaGuCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 33184 0.66 0.816917
Target:  5'- gCugGCCggcucugcGCCCGACuuggCGGCGCG-GGu -3'
miRNA:   3'- -GugCGG--------CGGGUUGcua-GUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 29622 0.66 0.808308
Target:  5'- -cCGCCGCCguGCuGUCGGaCGUGcUGGu -3'
miRNA:   3'- guGCGGCGGguUGcUAGUC-GCGC-ACC- -5'
6530 5' -57.9 NC_001847.1 + 85340 0.66 0.816917
Target:  5'- aGCG-CGCCCAGCag-CAGCgcacccggggGCGUGGc -3'
miRNA:   3'- gUGCgGCGGGUUGcuaGUCG----------CGCACC- -5'
6530 5' -57.9 NC_001847.1 + 36436 0.66 0.808308
Target:  5'- gCGCGCCGUagCGGCGcgcgCGGCGCGg-- -3'
miRNA:   3'- -GUGCGGCGg-GUUGCua--GUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 83026 0.66 0.816917
Target:  5'- gGCGCCGCCgGcccGCGGccgcUAGUGCGcuUGGg -3'
miRNA:   3'- gUGCGGCGGgU---UGCUa---GUCGCGC--ACC- -5'
6530 5' -57.9 NC_001847.1 + 33521 0.66 0.816917
Target:  5'- gGCGCCGCCgcggaGGCGccgGGCGCG-GGc -3'
miRNA:   3'- gUGCGGCGGg----UUGCuagUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 64573 0.66 0.808308
Target:  5'- -cCGCUGCCuCGggccGCGGggcauUgAGCGCGUGGc -3'
miRNA:   3'- guGCGGCGG-GU----UGCU-----AgUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 133805 0.66 0.816917
Target:  5'- --gGCCGCgCAGgGcgCGGCGC-UGGg -3'
miRNA:   3'- gugCGGCGgGUUgCuaGUCGCGcACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.