miRNA display CGI


Results 1 - 20 of 494 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 106109 0.74 0.381536
Target:  5'- gCGCGCaGCUCGGCGAgcgCGGCGCG-GGc -3'
miRNA:   3'- -GUGCGgCGGGUUGCUa--GUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 10821 0.76 0.303865
Target:  5'- gCGCGCUGCUgcagcaccugcgcgCGACGG-CGGCGCGUGGc -3'
miRNA:   3'- -GUGCGGCGG--------------GUUGCUaGUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 85127 0.76 0.305947
Target:  5'- gCGCGCCcgggGCCCAgcagGCGGUgGGCGCGcGGg -3'
miRNA:   3'- -GUGCGG----CGGGU----UGCUAgUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 132911 0.76 0.312962
Target:  5'- aCACGCCcgcGCCCAGCGccgCGGCGC-UGGc -3'
miRNA:   3'- -GUGCGG---CGGGUUGCua-GUCGCGcACC- -5'
6530 5' -57.9 NC_001847.1 + 45138 0.75 0.3201
Target:  5'- gACGCCGaggugCCGGCGGUgAGCGCGgGGg -3'
miRNA:   3'- gUGCGGCg----GGUUGCUAgUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 77619 0.75 0.326627
Target:  5'- gGCGCCGCUgGGCGAggaCGGCGCGccgcccgUGGa -3'
miRNA:   3'- gUGCGGCGGgUUGCUa--GUCGCGC-------ACC- -5'
6530 5' -57.9 NC_001847.1 + 37392 0.75 0.327358
Target:  5'- uGCGCUGa-CAACGAUCAGCGUGcUGGc -3'
miRNA:   3'- gUGCGGCggGUUGCUAGUCGCGC-ACC- -5'
6530 5' -57.9 NC_001847.1 + 83480 0.75 0.334738
Target:  5'- gUACGCCGCCCuguuGCGGgcgCAGCGcCGcGGc -3'
miRNA:   3'- -GUGCGGCGGGu---UGCUa--GUCGC-GCaCC- -5'
6530 5' -57.9 NC_001847.1 + 3016 0.75 0.357601
Target:  5'- aGCGCCGCCCAauagggGCGGUCAcgucuGCGCGc-- -3'
miRNA:   3'- gUGCGGCGGGU------UGCUAGU-----CGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 73178 0.76 0.299052
Target:  5'- -cCGCCGCgCCGGCGGgcaCGGCGCGcGGg -3'
miRNA:   3'- guGCGGCG-GGUUGCUa--GUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 64458 0.76 0.292278
Target:  5'- -cCGCCGCCC-GCGG-CGGCGCGgGGg -3'
miRNA:   3'- guGCGGCGGGuUGCUaGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 99467 0.76 0.285625
Target:  5'- gCGCGCCGCUCGGggccaaGAUCAGCGCGa-- -3'
miRNA:   3'- -GUGCGGCGGGUUg-----CUAGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 11854 0.81 0.148141
Target:  5'- gGCGCCGCCCuGCGggCGGCGCGa-- -3'
miRNA:   3'- gUGCGGCGGGuUGCuaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 134763 0.79 0.199773
Target:  5'- aGCGCgGUCCGGCGcgCGGCGCGcGGg -3'
miRNA:   3'- gUGCGgCGGGUUGCuaGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 62383 0.78 0.231062
Target:  5'- cCGCGCCGCCCGACGcgucuUUAGCGCa--- -3'
miRNA:   3'- -GUGCGGCGGGUUGCu----AGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 104078 0.78 0.242375
Target:  5'- gCGCGCCGagccCCCAGCGGUuggCGGCGCgGUGGc -3'
miRNA:   3'- -GUGCGGC----GGGUUGCUA---GUCGCG-CACC- -5'
6530 5' -57.9 NC_001847.1 + 133188 0.78 0.242375
Target:  5'- gGCGCCGCCCGGCGAggacgAGCGCcggcggcccgaGUGGc -3'
miRNA:   3'- gUGCGGCGGGUUGCUag---UCGCG-----------CACC- -5'
6530 5' -57.9 NC_001847.1 + 28205 0.77 0.253547
Target:  5'- gCGCGCCacggcggcguucgGCCCggUGAacaugCAGCGCGUGGu -3'
miRNA:   3'- -GUGCGG-------------CGGGuuGCUa----GUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 133081 0.77 0.272678
Target:  5'- -uCGCCGCCaccgcuGCGG-CGGCGCGUGGc -3'
miRNA:   3'- guGCGGCGGgu----UGCUaGUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 134048 0.77 0.279091
Target:  5'- gGCGCCGCCC-GCGGccgCGGCgcccgGCGUGGa -3'
miRNA:   3'- gUGCGGCGGGuUGCUa--GUCG-----CGCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.