miRNA display CGI


Results 1 - 20 of 494 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 12795 1.09 0.001932
Target:  5'- gCACGCCGCCCAACGAUCAGCGCGUGGc -3'
miRNA:   3'- -GUGCGGCGGGUUGCUAGUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 91638 0.84 0.095672
Target:  5'- gCGCGCCGCCCAguaGCGAUCgacggcGGCGCGgcgGGa -3'
miRNA:   3'- -GUGCGGCGGGU---UGCUAG------UCGCGCa--CC- -5'
6530 5' -57.9 NC_001847.1 + 11854 0.81 0.148141
Target:  5'- gGCGCCGCCCuGCGggCGGCGCGa-- -3'
miRNA:   3'- gUGCGGCGGGuUGCuaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 89632 0.8 0.17658
Target:  5'- cCGCGCCGCCCGGCGG-CGGCGCc--- -3'
miRNA:   3'- -GUGCGGCGGGUUGCUaGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 97791 0.8 0.181018
Target:  5'- aCGCGCCaGCuCCGcACGGUCGcGCGCGUGGc -3'
miRNA:   3'- -GUGCGG-CG-GGU-UGCUAGU-CGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 45622 0.79 0.185555
Target:  5'- uCGCuGCCGCCCGGCGG-CAGCGCGg-- -3'
miRNA:   3'- -GUG-CGGCGGGUUGCUaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 134763 0.79 0.199773
Target:  5'- aGCGCgGUCCGGCGcgCGGCGCGcGGg -3'
miRNA:   3'- gUGCGgCGGGUUGCuaGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 31950 0.79 0.199773
Target:  5'- aGCGCgGUCCGGCGcgCGGCGCGcGGg -3'
miRNA:   3'- gUGCGgCGGGUUGCuaGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 125425 0.78 0.225574
Target:  5'- gGCGCCGCCgGAgGAcCcGCGCGUGGc -3'
miRNA:   3'- gUGCGGCGGgUUgCUaGuCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 129263 0.78 0.231062
Target:  5'- gCGCgGCCGCCCuGCGcgCAGCGC-UGGa -3'
miRNA:   3'- -GUG-CGGCGGGuUGCuaGUCGCGcACC- -5'
6530 5' -57.9 NC_001847.1 + 62383 0.78 0.231062
Target:  5'- cCGCGCCGCCCGACGcgucuUUAGCGCa--- -3'
miRNA:   3'- -GUGCGGCGGGUUGCu----AGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 82843 0.78 0.23497
Target:  5'- gGCGCCGCCCGcgcccGCGGUCgcgcacacaaagccGGCGCGcGGg -3'
miRNA:   3'- gUGCGGCGGGU-----UGCUAG--------------UCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 66208 0.78 0.242375
Target:  5'- gGCGCCGCCCAGCGGcggcUCGgGCGCGc-- -3'
miRNA:   3'- gUGCGGCGGGUUGCU----AGU-CGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 1265 0.78 0.242375
Target:  5'- gCGCGCCGagccCCCAGCGGUuggCGGCGCgGUGGc -3'
miRNA:   3'- -GUGCGGC----GGGUUGCUA---GUCGCG-CACC- -5'
6530 5' -57.9 NC_001847.1 + 133188 0.78 0.242375
Target:  5'- gGCGCCGCCCGGCGAggacgAGCGCcggcggcccgaGUGGc -3'
miRNA:   3'- gUGCGGCGGGUUGCUag---UCGCG-----------CACC- -5'
6530 5' -57.9 NC_001847.1 + 104078 0.78 0.242375
Target:  5'- gCGCGCCGagccCCCAGCGGUuggCGGCGCgGUGGc -3'
miRNA:   3'- -GUGCGGC----GGGUUGCUA---GUCGCG-CACC- -5'
6530 5' -57.9 NC_001847.1 + 30375 0.78 0.242375
Target:  5'- gGCGCCGCCCGGCGAggacgAGCGCcggcggcccgaGUGGc -3'
miRNA:   3'- gUGCGGCGGGUUGCUag---UCGCG-----------CACC- -5'
6530 5' -57.9 NC_001847.1 + 28205 0.77 0.253547
Target:  5'- gCGCGCCacggcggcguucgGCCCggUGAacaugCAGCGCGUGGu -3'
miRNA:   3'- -GUGCGG-------------CGGGuuGCUa----GUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 45687 0.77 0.254146
Target:  5'- gGCGCCGUCCAaaaaguuccACGggCcgAGCGCGUGGu -3'
miRNA:   3'- gUGCGGCGGGU---------UGCuaG--UCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 69235 0.77 0.260206
Target:  5'- gACGCCGCgaCGGCGAaaaaaAGCGCGUGGc -3'
miRNA:   3'- gUGCGGCGg-GUUGCUag---UCGCGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.