miRNA display CGI


Results 1 - 20 of 494 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 5' -57.9 NC_001847.1 + 1114 0.72 0.50236
Target:  5'- gGCGCCGCcgcggccuccagcaCCAGCGGcggcgccUCGGCGCGcGGc -3'
miRNA:   3'- gUGCGGCG--------------GGUUGCU-------AGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 1265 0.78 0.242375
Target:  5'- gCGCGCCGagccCCCAGCGGUuggCGGCGCgGUGGc -3'
miRNA:   3'- -GUGCGGC----GGGUUGCUA---GUCGCG-CACC- -5'
6530 5' -57.9 NC_001847.1 + 1592 0.72 0.468597
Target:  5'- gCGCGCCGCucgggCCAGCGcgCGGCGCa--- -3'
miRNA:   3'- -GUGCGGCG-----GGUUGCuaGUCGCGcacc -5'
6530 5' -57.9 NC_001847.1 + 1657 0.68 0.705207
Target:  5'- uGCGCCuGCCCGACGGcCGGgccguCGCGcGGc -3'
miRNA:   3'- gUGCGG-CGGGUUGCUaGUC-----GCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 1838 0.68 0.724837
Target:  5'- gCGCGcCCGUCCAGCGccCGGCccagGCGUGc -3'
miRNA:   3'- -GUGC-GGCGGGUUGCuaGUCG----CGCACc -5'
6530 5' -57.9 NC_001847.1 + 1892 0.68 0.705207
Target:  5'- --gGuuGCCCAGCGccgCgAGCGCGUGc -3'
miRNA:   3'- gugCggCGGGUUGCua-G-UCGCGCACc -5'
6530 5' -57.9 NC_001847.1 + 2061 0.72 0.506178
Target:  5'- aCGCGCCGCCgCAGCGGUggCGGCgagcgccccGCG-GGg -3'
miRNA:   3'- -GUGCGGCGG-GUUGCUA--GUCG---------CGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 2158 0.68 0.715056
Target:  5'- gGCGCCaggGCUCGGgGAagAGCGgGUGGu -3'
miRNA:   3'- gUGCGG---CGGGUUgCUagUCGCgCACC- -5'
6530 5' -57.9 NC_001847.1 + 2181 0.69 0.655232
Target:  5'- cCGCGCCGCCU---GggCGGCGUGcGGg -3'
miRNA:   3'- -GUGCGGCGGGuugCuaGUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 2233 0.67 0.763093
Target:  5'- cCGCGgCGCUgGGCGcg-GGCGUGUGGu -3'
miRNA:   3'- -GUGCgGCGGgUUGCuagUCGCGCACC- -5'
6530 5' -57.9 NC_001847.1 + 2354 0.69 0.635058
Target:  5'- cCGCGCCgGCCCGGCcgcGUCGGCgGCGgcGGc -3'
miRNA:   3'- -GUGCGG-CGGGUUGc--UAGUCG-CGCa-CC- -5'
6530 5' -57.9 NC_001847.1 + 2658 0.66 0.833639
Target:  5'- gGCGCCuucGCCCGGCGGcUCGGC-CGg-- -3'
miRNA:   3'- gUGCGG---CGGGUUGCU-AGUCGcGCacc -5'
6530 5' -57.9 NC_001847.1 + 2960 0.72 0.496656
Target:  5'- gGCgGCCGCCuCGGCGcgCAGCGCcgccgGGg -3'
miRNA:   3'- gUG-CGGCGG-GUUGCuaGUCGCGca---CC- -5'
6530 5' -57.9 NC_001847.1 + 3016 0.75 0.357601
Target:  5'- aGCGCCGCCCAauagggGCGGUCAcgucuGCGCGc-- -3'
miRNA:   3'- gUGCGGCGGGU------UGCUAGU-----CGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 3071 0.68 0.715056
Target:  5'- uGCGCCG-CCAGCGcGUCcGGCGCGcaGGc -3'
miRNA:   3'- gUGCGGCgGGUUGC-UAG-UCGCGCa-CC- -5'
6530 5' -57.9 NC_001847.1 + 3125 0.66 0.825364
Target:  5'- aGCGCCuuuacgagcaGCCCcGCGAgCAGCGUGg-- -3'
miRNA:   3'- gUGCGG----------CGGGuUGCUaGUCGCGCacc -5'
6530 5' -57.9 NC_001847.1 + 3230 0.68 0.715056
Target:  5'- cCGCGCCGCCgCGgcuuGCGGUaCAGCaGCGa-- -3'
miRNA:   3'- -GUGCGGCGG-GU----UGCUA-GUCG-CGCacc -5'
6530 5' -57.9 NC_001847.1 + 3296 0.74 0.381536
Target:  5'- gCGCGCaGCUCGGCGAgcgCGGCGCG-GGc -3'
miRNA:   3'- -GUGCGgCGGGUUGCUa--GUCGCGCaCC- -5'
6530 5' -57.9 NC_001847.1 + 3804 0.71 0.56476
Target:  5'- gCACGCgGCCgGGCGGcggCGGCGCGcugccGGg -3'
miRNA:   3'- -GUGCGgCGGgUUGCUa--GUCGCGCa----CC- -5'
6530 5' -57.9 NC_001847.1 + 3846 0.72 0.477862
Target:  5'- uCGCGCCGCCCcaGACGuagaCGGCGcCG-GGg -3'
miRNA:   3'- -GUGCGGCGGG--UUGCua--GUCGC-GCaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.