miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 134945 0.67 0.448454
Target:  5'- -gGCGCCggggGCgggGGCggGgGCGgGGGCc -3'
miRNA:   3'- caUGCGGa---CGa--CCGa-CgCGCgCCCGc -5'
6535 5' -63.2 NC_001847.1 + 134214 0.67 0.45736
Target:  5'- -gGCGCggGCUcgGGCUucccgGCGCcgGCGGGCGg -3'
miRNA:   3'- caUGCGgaCGA--CCGA-----CGCG--CGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 134186 0.7 0.333418
Target:  5'- -gACGCCcgGCgcagcguggagcGGC-GCGCGCGGGCc -3'
miRNA:   3'- caUGCGGa-CGa-----------CCGaCGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 134108 0.71 0.273738
Target:  5'- -gACGCUcgUGCU-GCUGCGgcgcgcCGCGGGCGg -3'
miRNA:   3'- caUGCGG--ACGAcCGACGC------GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133978 0.81 0.053835
Target:  5'- -gGCGCCgggGCUGGgaGCGCGCGcGGCa -3'
miRNA:   3'- caUGCGGa--CGACCgaCGCGCGC-CCGc -5'
6535 5' -63.2 NC_001847.1 + 133915 0.72 0.232626
Target:  5'- uGUACcugGCCUGCgGGCgGCGCGCGcuggagcuGGCGc -3'
miRNA:   3'- -CAUG---CGGACGaCCGaCGCGCGC--------CCGC- -5'
6535 5' -63.2 NC_001847.1 + 133595 0.66 0.538424
Target:  5'- -cGCGCUaucggGCgggcgGGCUugggcggcacaagcGCGCGCGGGgGg -3'
miRNA:   3'- caUGCGGa----CGa----CCGA--------------CGCGCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 133582 0.74 0.187531
Target:  5'- -cGCGCCgUGCUGGCcucgcgGCGCGUcuucggcccGGGCGc -3'
miRNA:   3'- caUGCGG-ACGACCGa-----CGCGCG---------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133546 0.77 0.102964
Target:  5'- aGUGCGCCgcgcGCUGGCccgagcgGCGCGCuGGCGc -3'
miRNA:   3'- -CAUGCGGa---CGACCGa------CGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133413 0.7 0.306536
Target:  5'- cUGCGCgCgGCUGGCcGCgGCGCGGcgGCGg -3'
miRNA:   3'- cAUGCG-GaCGACCGaCG-CGCGCC--CGC- -5'
6535 5' -63.2 NC_001847.1 + 133157 0.74 0.187531
Target:  5'- -aGCGCCUuuuCUGcGCUGCuaccuGCGCGGGCGc -3'
miRNA:   3'- caUGCGGAc--GAC-CGACG-----CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 132956 0.68 0.388959
Target:  5'- gGUGCGCCcGCacGCcgcccagGCgGCGCGGGCGc -3'
miRNA:   3'- -CAUGCGGaCGacCGa------CG-CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 132546 0.66 0.503232
Target:  5'- -gGCGCg-GCgGGCUcGCGUGCGGccGCGg -3'
miRNA:   3'- caUGCGgaCGaCCGA-CGCGCGCC--CGC- -5'
6535 5' -63.2 NC_001847.1 + 132292 0.66 0.500421
Target:  5'- ---gGCCUgggcGCUGGC-GCGCGCGcuguucagcccgccGGCGg -3'
miRNA:   3'- caugCGGA----CGACCGaCGCGCGC--------------CCGC- -5'
6535 5' -63.2 NC_001847.1 + 132098 0.71 0.273738
Target:  5'- cUGCGCCUGC-GGCUGCuGgGCGcGCa -3'
miRNA:   3'- cAUGCGGACGaCCGACG-CgCGCcCGc -5'
6535 5' -63.2 NC_001847.1 + 132073 0.67 0.46636
Target:  5'- -cGCGCCggacgcGCUGGCgGCGCaccCGGaGCGc -3'
miRNA:   3'- caUGCGGa-----CGACCGaCGCGc--GCC-CGC- -5'
6535 5' -63.2 NC_001847.1 + 131931 0.7 0.327618
Target:  5'- -cGCGCgaGC-GGCUGCGCGagcuGGCGg -3'
miRNA:   3'- caUGCGgaCGaCCGACGCGCgc--CCGC- -5'
6535 5' -63.2 NC_001847.1 + 131896 0.69 0.372935
Target:  5'- -gGCGCCccUGCcgccGGCgaGCacgGCGCGGGCGg -3'
miRNA:   3'- caUGCGG--ACGa---CCGa-CG---CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 131590 0.75 0.157957
Target:  5'- -cGCGCCUGCUGcaGCgGCGCGUgcaGGGCu -3'
miRNA:   3'- caUGCGGACGAC--CGaCGCGCG---CCCGc -5'
6535 5' -63.2 NC_001847.1 + 131535 0.67 0.462749
Target:  5'- -gACGCCaugGcCUGGCUGCagagcgcgaagcuCGCGGGCc -3'
miRNA:   3'- caUGCGGa--C-GACCGACGc------------GCGCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.