miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
655 5' -56.1 AC_000017.1 + 14553 0.66 0.530956
Target:  5'- --gGUCGCCGCC-CcAGUGCgaccgGUCg -3'
miRNA:   3'- ugaCGGCGGCGGuGuUCACGaaa--CGG- -5'
655 5' -56.1 AC_000017.1 + 12276 0.66 0.530956
Target:  5'- --cGCCGCCgacguugccagcGCgCGCGGGUGCcaccGCCa -3'
miRNA:   3'- ugaCGGCGG------------CG-GUGUUCACGaaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 26248 0.66 0.509078
Target:  5'- aGCUGCCGCCGCCACccacggacgagGAGgaauaCUgggacaGUCa -3'
miRNA:   3'- -UGACGGCGGCGGUG-----------UUCac---GAaa----CGG- -5'
655 5' -56.1 AC_000017.1 + 35592 0.66 0.502589
Target:  5'- gGCUGCCGCuguggaagCGCUguauguuguucuggaGCGggagGGUGCUauuUUGCCu -3'
miRNA:   3'- -UGACGGCG--------GCGG---------------UGU----UCACGA---AACGG- -5'
655 5' -56.1 AC_000017.1 + 13267 0.66 0.48759
Target:  5'- uCUGCCGCCGgUuggucaGCAGGUaGUUcagggUUGCCu -3'
miRNA:   3'- uGACGGCGGCgG------UGUUCA-CGA-----AACGG- -5'
655 5' -56.1 AC_000017.1 + 2213 0.67 0.470712
Target:  5'- uGCUGCUGuuGCUGCugcUGCUccuccgucgguauuaUUGCCg -3'
miRNA:   3'- -UGACGGCggCGGUGuucACGA---------------AACGG- -5'
655 5' -56.1 AC_000017.1 + 13727 0.67 0.45619
Target:  5'- cGCgggGCCGCagCGCCuagaucggACAAGcUGCUUgGCCu -3'
miRNA:   3'- -UGa--CGGCG--GCGG--------UGUUC-ACGAAaCGG- -5'
655 5' -56.1 AC_000017.1 + 15230 0.67 0.45619
Target:  5'- aGCUGCCGCCcCCGC---UGCggagGCUg -3'
miRNA:   3'- -UGACGGCGGcGGUGuucACGaaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 17545 0.67 0.445967
Target:  5'- --cGCCGUCGCCAgcccGUGCUg-GCCc -3'
miRNA:   3'- ugaCGGCGGCGGUguu-CACGAaaCGG- -5'
655 5' -56.1 AC_000017.1 + 11149 0.67 0.435873
Target:  5'- uCUGCCGCUGCUcu---UGCUcUUGCCg -3'
miRNA:   3'- uGACGGCGGCGGuguucACGA-AACGG- -5'
655 5' -56.1 AC_000017.1 + 17852 0.68 0.416087
Target:  5'- cACUGaUCGCCGCgGCGAuugGCgccgUGCCc -3'
miRNA:   3'- -UGAC-GGCGGCGgUGUUca-CGaa--ACGG- -5'
655 5' -56.1 AC_000017.1 + 3791 0.68 0.416087
Target:  5'- gACUGCagccucCGCCGCCGCuucAGccGCUgcaGCCa -3'
miRNA:   3'- -UGACG------GCGGCGGUGu--UCa-CGAaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 27231 0.68 0.416087
Target:  5'- -gUGgCGCUGaCgACAGGUGCUggcGCCg -3'
miRNA:   3'- ugACgGCGGC-GgUGUUCACGAaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 4679 0.68 0.396861
Target:  5'- --gGCCGCCGCC-CGuggGCccaUUGCCa -3'
miRNA:   3'- ugaCGGCGGCGGuGUucaCGa--AACGG- -5'
655 5' -56.1 AC_000017.1 + 33153 0.69 0.359282
Target:  5'- aGCUGCUGa-GCCACAGGcUGCUguccaacUUGCg -3'
miRNA:   3'- -UGACGGCggCGGUGUUC-ACGA-------AACGg -5'
655 5' -56.1 AC_000017.1 + 14267 0.69 0.342731
Target:  5'- --cGCCGCCGCCACug--GC---GCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGuucaCGaaaCGG- -5'
655 5' -56.1 AC_000017.1 + 11544 0.69 0.342731
Target:  5'- --gGCgGCCGCCACGuGUGCgc-GCg -3'
miRNA:   3'- ugaCGgCGGCGGUGUuCACGaaaCGg -5'
655 5' -56.1 AC_000017.1 + 16363 0.69 0.32591
Target:  5'- aGCaGCCGCgGCCAUuAGUGCUaUGaCUc -3'
miRNA:   3'- -UGaCGGCGgCGGUGuUCACGAaAC-GG- -5'
655 5' -56.1 AC_000017.1 + 15134 0.7 0.301843
Target:  5'- --cGCCGCUGCCAC---UGUUgUUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGuucACGA-AACGG- -5'
655 5' -56.1 AC_000017.1 + 29231 0.7 0.286573
Target:  5'- uGCUGCCGCCGCUucuuGCu--UGCaUUGCa -3'
miRNA:   3'- -UGACGGCGGCGG----UGuucACGaAACGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.