miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 3' -61.7 NC_001847.1 + 51519 0.66 0.610477
Target:  5'- -----cGGUGCGGCgccgGCagGCGgGGGCGg -3'
miRNA:   3'- aaccauCCACGCCGa---CG--CGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 5862 0.66 0.610477
Target:  5'- cUGGcccucgAGGUGguccaGcGCUGCGCGcaGGGCGg -3'
miRNA:   3'- aACCa-----UCCACg----C-CGACGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 18215 0.66 0.609472
Target:  5'- -cGGUacGGGcugUGCGGCUcucgGCGCGUGcucgcguGGCGc -3'
miRNA:   3'- aaCCA--UCC---ACGCCGA----CGCGCAC-------CCGC- -5'
6562 3' -61.7 NC_001847.1 + 10857 0.66 0.60043
Target:  5'- gUGGccgAGGcGCGGC-GgGCGcGGGCGc -3'
miRNA:   3'- aACCa--UCCaCGCCGaCgCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 80 0.66 0.60043
Target:  5'- -gGGUGGGggauggGCGcGgaGCGCGaGGGUa -3'
miRNA:   3'- aaCCAUCCa-----CGC-CgaCGCGCaCCCGc -5'
6562 3' -61.7 NC_001847.1 + 36015 0.66 0.60043
Target:  5'- -cGGgcguGGUGCuggGGCUGCGCGcGGaCGa -3'
miRNA:   3'- aaCCau--CCACG---CCGACGCGCaCCcGC- -5'
6562 3' -61.7 NC_001847.1 + 37582 0.66 0.60043
Target:  5'- cUGGccGcUGCGGCUGCGgCGgccggGGGCc -3'
miRNA:   3'- aACCauCcACGCCGACGC-GCa----CCCGc -5'
6562 3' -61.7 NC_001847.1 + 124460 0.66 0.60043
Target:  5'- -cGGUGcGGgaaGCGGCUGguuCGCGUGcGCGu -3'
miRNA:   3'- aaCCAU-CCa--CGCCGAC---GCGCACcCGC- -5'
6562 3' -61.7 NC_001847.1 + 35254 0.66 0.59341
Target:  5'- -gGGUagagcguucgcgccgGGGUGCaaacgcuGGCauaagaacgGUGCGUGGGCGg -3'
miRNA:   3'- aaCCA---------------UCCACG-------CCGa--------CGCGCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 3707 0.66 0.590405
Target:  5'- -aGGUAGGcGCGGCaaucgcGCGCGccGGCc -3'
miRNA:   3'- aaCCAUCCaCGCCGa-----CGCGCacCCGc -5'
6562 3' -61.7 NC_001847.1 + 29064 0.66 0.590405
Target:  5'- -aGGc-GGUG-GGCUGCGUGgcgguggcGGGCGg -3'
miRNA:   3'- aaCCauCCACgCCGACGCGCa-------CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 66036 0.66 0.587403
Target:  5'- cUGGaggAGGUauacgcgcacgucgGCGGCgGCGCcggGGGCGa -3'
miRNA:   3'- aACCa--UCCA--------------CGCCGaCGCGca-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 59896 0.66 0.58041
Target:  5'- gUUGGcgAGGaggGCGGCgcGCGCGcGcGGCGa -3'
miRNA:   3'- -AACCa-UCCa--CGCCGa-CGCGCaC-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 73149 0.66 0.58041
Target:  5'- cUGG-AGGagGCGGC-GCGCc-GGGCGg -3'
miRNA:   3'- aACCaUCCa-CGCCGaCGCGcaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 127331 0.66 0.57045
Target:  5'- -cGGcgccgAGGcgGcCGGCUGcCGCGgcagGGGCGg -3'
miRNA:   3'- aaCCa----UCCa-C-GCCGAC-GCGCa---CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 28831 0.66 0.57045
Target:  5'- -cGGU-GGUGCGGCUGCuagaacGCGcGGccGCGc -3'
miRNA:   3'- aaCCAuCCACGCCGACG------CGCaCC--CGC- -5'
6562 3' -61.7 NC_001847.1 + 85791 0.66 0.57045
Target:  5'- -cGGUgcgcgucgaGGGUGCGG--GCGCGUgcagcgacgGGGCGa -3'
miRNA:   3'- aaCCA---------UCCACGCCgaCGCGCA---------CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 31810 0.66 0.560533
Target:  5'- gUGGc-GGUG-GGCgGCGCGgGGGCa -3'
miRNA:   3'- aACCauCCACgCCGaCGCGCaCCCGc -5'
6562 3' -61.7 NC_001847.1 + 32998 0.66 0.560533
Target:  5'- -aGGgcGGccggaGCGGCcgggggGCGCGcgGGGCGa -3'
miRNA:   3'- aaCCauCCa----CGCCGa-----CGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 125730 0.66 0.560533
Target:  5'- cUGGgcugGGGUGggcUGGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCAC---GCCGACgCGcACCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.