miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 5' -55.5 NC_001847.1 + 2327 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 105140 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 1909 0.66 0.87895
Target:  5'- aGCGCGUGCGagagcccgcCGCGGCgcgGCgGCCAc-- -3'
miRNA:   3'- cUGUGUACGC---------GCGUCGa--CG-CGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 133180 0.66 0.87895
Target:  5'- uGCGCggGCGCG-GGCUGCccucGCUGGAGg -3'
miRNA:   3'- cUGUGuaCGCGCgUCGACG----CGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 116569 0.66 0.87895
Target:  5'- uGGCGCAcGUGgGCAuCUGCGCUcuGGg -3'
miRNA:   3'- -CUGUGUaCGCgCGUcGACGCGGuuUC- -5'
6562 5' -55.5 NC_001847.1 + 112108 0.66 0.87895
Target:  5'- gGACugGcucgagcgGCGCGUGGCcGCGgCAGAGu -3'
miRNA:   3'- -CUGugUa-------CGCGCGUCGaCGCgGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 97621 0.66 0.87895
Target:  5'- uGCACcgucgaggGUGCGUccagGCGGC-GCGCCAAAa -3'
miRNA:   3'- cUGUG--------UACGCG----CGUCGaCGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 96623 0.66 0.87895
Target:  5'- uGCGCGUGCGCGggggcCGGCggguacgcgucgUGCGCgGGGGc -3'
miRNA:   3'- cUGUGUACGCGC-----GUCG------------ACGCGgUUUC- -5'
6562 5' -55.5 NC_001847.1 + 64118 0.66 0.87895
Target:  5'- gGugACAgaGCGUGCccauGGCcGCGCCGAAc -3'
miRNA:   3'- -CugUGUa-CGCGCG----UCGaCGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 59212 0.66 0.87895
Target:  5'- uGugGCG-GCGCaCGGCgGCGCCAc-- -3'
miRNA:   3'- -CugUGUaCGCGcGUCGaCGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 57817 0.66 0.87895
Target:  5'- --aGCA-GCGCGCAGUgccccGCGUCGAAc -3'
miRNA:   3'- cugUGUaCGCGCGUCGa----CGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 73244 0.66 0.87895
Target:  5'- cGGCGCggGCGCGCucgaGGCcgUGCGCgCAc-- -3'
miRNA:   3'- -CUGUGuaCGCGCG----UCG--ACGCG-GUuuc -5'
6562 5' -55.5 NC_001847.1 + 51557 0.66 0.886151
Target:  5'- cGGCGCAgcucGCcaGCGCuuccGCgGCGCCGGGGc -3'
miRNA:   3'- -CUGUGUa---CG--CGCGu---CGaCGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 46686 0.66 0.886151
Target:  5'- aGCACGcGCGCGCGGUcgGgGCCc--- -3'
miRNA:   3'- cUGUGUaCGCGCGUCGa-CgCGGuuuc -5'
6562 5' -55.5 NC_001847.1 + 113799 0.66 0.886151
Target:  5'- cGACg---GCGCGCAucGuCUGCGCCAc-- -3'
miRNA:   3'- -CUGuguaCGCGCGU--C-GACGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 70240 0.66 0.886151
Target:  5'- uGACGCGcgggGCGgGCGGCggGCGCgCGGc- -3'
miRNA:   3'- -CUGUGUa---CGCgCGUCGa-CGCG-GUUuc -5'
6562 5' -55.5 NC_001847.1 + 52736 0.66 0.886151
Target:  5'- ------aGCGCGCAccGgUGCGCCAGAa -3'
miRNA:   3'- cuguguaCGCGCGU--CgACGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 13419 0.66 0.886151
Target:  5'- aGACGg--GCGCGcCAGCgcGCGCCGugAAGa -3'
miRNA:   3'- -CUGUguaCGCGC-GUCGa-CGCGGU--UUC- -5'
6562 5' -55.5 NC_001847.1 + 88609 0.66 0.87895
Target:  5'- gGGCGCgcgcuccacuuuGUGCGCGC-GCacgUGCGCgAGAGc -3'
miRNA:   3'- -CUGUG------------UACGCGCGuCG---ACGCGgUUUC- -5'
6562 5' -55.5 NC_001847.1 + 119808 0.66 0.87895
Target:  5'- cGGCAC-UGCGCGCGGaUG-GCCGc-- -3'
miRNA:   3'- -CUGUGuACGCGCGUCgACgCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.