Results 1 - 20 of 491 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6562 | 5' | -55.5 | NC_001847.1 | + | 40147 | 1.07 | 0.002828 |
Target: 5'- gGACACAUGCGCGCAGCUGCGCCAAAGc -3' miRNA: 3'- -CUGUGUACGCGCGUCGACGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 100204 | 0.84 | 0.110535 |
Target: 5'- cACGCgAUGcCGCGCAGCUGCGCCAGc- -3' miRNA: 3'- cUGUG-UAC-GCGCGUCGACGCGGUUuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 30195 | 0.81 | 0.160454 |
Target: 5'- cGACGCG-GUGCGCGGCgcgcGCGCCGAAGc -3' miRNA: 3'- -CUGUGUaCGCGCGUCGa---CGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 52012 | 0.81 | 0.164708 |
Target: 5'- gGACGCAgcagGCGCGCAcuagcGCUcGCGCCAGGGg -3' miRNA: 3'- -CUGUGUa---CGCGCGU-----CGA-CGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 49047 | 0.81 | 0.169063 |
Target: 5'- --aGCGUGCGCGUaaAGCUGCGCCGAc- -3' miRNA: 3'- cugUGUACGCGCG--UCGACGCGGUUuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 63865 | 0.8 | 0.187528 |
Target: 5'- gGGCGCAUGCGCGaCGGCUgggacGCGCUGGAGu -3' miRNA: 3'- -CUGUGUACGCGC-GUCGA-----CGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 52630 | 0.8 | 0.197412 |
Target: 5'- cGGCGCGUGCGCG-AGCgccGCGCCAGAc -3' miRNA: 3'- -CUGUGUACGCGCgUCGa--CGCGGUUUc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 11322 | 0.79 | 0.218546 |
Target: 5'- cGAgGCcgGCGgGCGGCUgGCGCCGGAGc -3' miRNA: 3'- -CUgUGuaCGCgCGUCGA-CGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 37696 | 0.79 | 0.224123 |
Target: 5'- uGGCGCGgcugcgGCGCGCGGCUGCGCagcaacaAGAGc -3' miRNA: 3'- -CUGUGUa-----CGCGCGUCGACGCGg------UUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 117420 | 0.78 | 0.247651 |
Target: 5'- gGACGCuu-CGCGCGGCUGCGCCcuGGc -3' miRNA: 3'- -CUGUGuacGCGCGUCGACGCGGuuUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 34262 | 0.78 | 0.26661 |
Target: 5'- aGGCGCAgaccgGCGCGCGGCggcuggGCGCCGc-- -3' miRNA: 3'- -CUGUGUa----CGCGCGUCGa-----CGCGGUuuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 94048 | 0.77 | 0.293692 |
Target: 5'- -cCACGUGCagGCGCAGCUGgGCCGGc- -3' miRNA: 3'- cuGUGUACG--CGCGUCGACgCGGUUuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 34633 | 0.77 | 0.300789 |
Target: 5'- cGGCGCcUGCGCGCcgaggccgAGCggcGCGCCGAGGg -3' miRNA: 3'- -CUGUGuACGCGCG--------UCGa--CGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 69379 | 0.77 | 0.315379 |
Target: 5'- uACACG-GCGCGCAGCUuGCGCCc--- -3' miRNA: 3'- cUGUGUaCGCGCGUCGA-CGCGGuuuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 97445 | 0.76 | 0.322872 |
Target: 5'- uGCGCAgccgcGCGcCGCAGCcGCGCCAGGGc -3' miRNA: 3'- cUGUGUa----CGC-GCGUCGaCGCGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 100382 | 0.76 | 0.322872 |
Target: 5'- -cCGCG-GCGCGCAGCcGCGCCAGc- -3' miRNA: 3'- cuGUGUaCGCGCGUCGaCGCGGUUuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 88869 | 0.76 | 0.337473 |
Target: 5'- aGACGCgGUGCGCGCGGCgGCggcggcggcucccGCCGGGGg -3' miRNA: 3'- -CUGUG-UACGCGCGUCGaCG-------------CGGUUUC- -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 106122 | 0.76 | 0.338255 |
Target: 5'- cGCGCGgcucuggGCGCGaUAGCUGCGCCAGc- -3' miRNA: 3'- cUGUGUa------CGCGC-GUCGACGCGGUUuc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 63223 | 0.76 | 0.338255 |
Target: 5'- uACGCGUGCGCGCGccGC-GCGCCGGGu -3' miRNA: 3'- cUGUGUACGCGCGU--CGaCGCGGUUUc -5' |
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6562 | 5' | -55.5 | NC_001847.1 | + | 101359 | 0.76 | 0.346143 |
Target: 5'- gGGCuGCAUGCGCGCGcUUGCGCCGcGGg -3' miRNA: 3'- -CUG-UGUACGCGCGUcGACGCGGUuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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